Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14 156 1e-32 seq7 132 1e-25 seq41 122 2e-22 seq34 120 7e-22 >seq14 Length=1282488 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||||| |||||||||| |||||||||| ||| || | || ||| Sbjct 734845 AGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCT 734904 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| ||||| |||||||| || ||||||||||| ||| ||||| ||| Sbjct 734905 TCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCC 734964 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||||||| |||| | ||| | || ||| |||||||||||||| || Sbjct 734965 TGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTT 735024 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || || || || ||||| Sbjct 735025 TTCCCCGTCAACGTCTTGACGAAGATTTG 735053 >seq7 Length=1798773 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||||| || ||||||||||||| ||||||||| | || Sbjct 108933 CGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTG 108874 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| |||||| || || ||||| | |||||||||||| || ||| ||| Sbjct 108873 CGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCT 108814 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||||||||||||| || | | ||| | | ||| || || | | Sbjct 108813 TCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGC 108754 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| | || ||||| || ||||| Sbjct 108753 GTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTG 108716 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||||||||||| ||||||||| | || | || ||| Sbjct 108696 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108637 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || || ||||| | |||||||||||| || ||| ||||| || Sbjct 108636 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108577 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||||||||||||| || | | ||| | | ||| || || | |||||| ||| Sbjct 108576 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108517 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 108516 TTGCCGGTGAGGGTCTTGACAAAGATCTG 108488 >seq41 Length=515451 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||||||||| |||| |||||| || || || | || |||||||| ||| Sbjct 381925 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGC 381984 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || |||||||| || ||||| || ||| |||||||| ||||| |||||| Sbjct 381985 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTT 382044 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| ||| |||| | ||| | | || || || | |||||||| || ||||| Sbjct 382045 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTC 382104 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || ||||| ||||| Sbjct 382105 AGTGTCTTGACAAAGATTTG 382124 >seq34 Length=561022 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||| |||||||||| ||||||||| ||| || | |||||||||| ||||| ||| Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 36254 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||||||||||| || || ||||| || || ||||||||||| Sbjct 36253 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 36194 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | | ||| | | ||| || ||||||||||| ||||| || || | ||| Sbjct 36193 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 36134 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 36133 TTGACGAAAATCTG 36120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178908987380945