Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq34 132 5e-26 seq14 131 2e-25 seq7 129 7e-25 seq41 116 4e-21 seq4 82.4 9e-11 >seq34 Length=561022 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||||||||||| ||||||||| | ||||| | || || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||||||||| || ||||||||||||||||| | ||| | || |||||||| Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| | ||||| ||| | | | || |||| || |||||| |||| ||||||||| | Sbjct 36206 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 36148 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 | || |||| || || || || || ||||| || || Sbjct 36147 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 36111 >seq14 Length=1282488 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || ||||| || ||||||||||| |||||||| | ||||| |||| || Sbjct 734847 CACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTC 734906 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | ||||||||||| || || | ||| |||||||| | || | | ||||||||| Sbjct 734907 CAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTG 734966 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| | ||| | ||| | | | || |||| | ||||||||||| ||||||||||| Sbjct 734967 GATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTT 735025 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||||| ||| || || ||||||||||| Sbjct 735026 TCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq7 Length=1798773 Score = 129 bits (142), Expect = 7e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| |||| || | ||||||||| || || Sbjct 108904 CTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 108845 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| | ||| | ||| Sbjct 108844 GATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 108786 Query 46522 CGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || || |||| | |||||| || | ||||||||| || ||||||| ||| || | Sbjct 108785 TGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCA 108726 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 108725 CGAAGATTTGCAT 108713 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||| || ||||| |||| || | ||||||||| || || Sbjct 108676 CTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 108617 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| | ||| | ||| Sbjct 108616 GATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 108558 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | || |||| | |||||| || | ||||||||| ||||| || || || || | Sbjct 108557 TGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGA 108498 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 108497 CAAAGATCTGCAT 108485 >seq41 Length=515451 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||||| ||||| || |||||| ||||| ||||| ||| || ||||| || Sbjct 381913 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 381972 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || ||||| || || || || | ||| ||||| || | || | | |||||| Sbjct 381973 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 382032 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| | ||||| ||| | | | || ||| | || || || | ||||| Sbjct 382033 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGAT 382091 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||||||| || || |||||||||||||| Sbjct 382092 CGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq4 Length=1887962 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435 || |||| ||||||||||| || | |||||| |||||||||| | || || Sbjct 1183534 AACCGCAGCACCAGATGCAGGGTCGAGTGGGATTGGATGTTGTAGTCGGCCAACGTCCGG 1183593 Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495 || || |||||||| || || || || ||||||||||||||||| | ||| | | |||| Sbjct 1183594 TCATCTTCGAGCTGTTTTCCAGCAAAAATCAAGCGCTGCTGGTCTGGCGGTATACCCTCC 1183653 Query 46496 TTGTC 46500 ||||| Sbjct 1183654 TTGTC 1183658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565232500324200