Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 378 7e-100 seq41 140 3e-28 seq7 136 4e-27 seq14 122 9e-23 seq34 118 1e-21 seq4 82.4 8e-11 >seq18 Length=978767 Score = 378 bits (418), Expect = 7e-100 Identities = 454/611 (74%), Gaps = 6/611 (1%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||||||| ||||||||||| |||| ||| ||||| | || ||||||||||| || Sbjct 580954 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 580895 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | || ||| |||||||| ||||| || ||||||||||| |||| | ||| || | Sbjct 580894 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGG 580835 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||||| ||| || ||||| ||||| || || | ||||||| || ||| ||| | Sbjct 580834 AGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCT 580775 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 || || || ||| |||||||| | |||||| |||||||||| || ||||||| Sbjct 580774 TGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGA 580715 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCG 133186 ||||| || || ||| ||||| || | | ||| |||||||||||| || Sbjct 580714 TGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCG 580655 Query 133187 AATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCT 133246 | |||| ||||||||| | ||| || ||||||||||| || || |||||||| ||||||| Sbjct 580654 AGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCT 580595 Query 133247 CGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCGTC 133304 || || |||||||| | || ||| | || | |||| |||||||||||||||||||| Sbjct 580594 CGGGGACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGGTTTTCGTTGACGATGCCGTC 580537 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 ||| || || || || |||||||||||| ||||||| |||||||||||| ||| Sbjct 580536 GCTCGCAGCAAAGAACGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGACAACTT 580477 Query 133365 CTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 |||||||||| || | || | || ||| | |||||| | ||||| || ||||| Sbjct 580476 GATCCAGTCGCGC-TGATCGTGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGCCT 580418 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 ||||||| |||||||| ||||| ||||| || || || || || | ||| |||||| Sbjct 580417 CGGCTTTCTTGTACATTTCCCACACGTCCGCATGCTGGATCGGGAACAACACGAACCGGT 580358 Query 133484 GGGGGTTTTCG 133494 |||||| ||| Sbjct 580357 TGGGGTTCTCG 580347 >seq41 Length=515451 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || ||||||||||| ||||| ||||||| ||| || | Sbjct 382127 ATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCG 382068 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || ||||| || | || || Sbjct 382067 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 382009 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||||| || || ||||| |||| |||||||| | ||| ||||| Sbjct 382008 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 381949 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||| |||||||||||| |||| Sbjct 381948 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 381913 >seq7 Length=1798773 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| ||||||| || | || Sbjct 108485 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTTCC 108544 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || |||| || | ||||| || || |||||| | ||||| Sbjct 108545 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 108603 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 108604 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 108663 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || || || |||||||| ||| || | || ||| Sbjct 108664 CATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGC 108712 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | ||||| || |||||||| ||||||| || | || Sbjct 108713 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 108772 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || |||| || | ||||| || || |||||| | ||||| Sbjct 108773 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 108831 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 108832 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 108891 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| | || || |||||||| || || Sbjct 108892 CATCCAAAAGGAGTCCACCCTCCATTTGGTCCTTCG 108927 >seq14 Length=1282488 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | ||||| ||||||||||| | || || || | || Sbjct 735056 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 734997 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || |||||| | ||||| Sbjct 734996 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCA 734938 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| || |||| |||| ||||| | | |||||||| Sbjct 734937 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAA 734878 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| ||||| |||| | ||||| || Sbjct 734877 CATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCG 734842 >seq34 Length=561022 Score = 118 bits (130), Expect = 1e-21 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || || || |||||||| | ||||| || | Sbjct 36113 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACC 36172 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC- 38357 ||||| | || |||| | || |||| |||| ||||| || || || |||||| Sbjct 36173 GTCCGACTCGATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGCAT-CCCGCCT 36230 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||||| | || | || ||||| || |||| || | |||||| | | |||| Sbjct 36231 GACCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGAC 36290 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||||||||| ||||| |||| |||||||| || Sbjct 36291 TACAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCG 36331 >seq4 Length=1887962 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/219 (69%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || ||| | || ||| | |||||||| |||||||| || ||| |||| | | || Sbjct 1183745 ATCTTCATCAAGACGTTGACGGGCAAGACCATCAC-GTTGACCGTGAGG--ATGG---GC 1183692 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCG------ACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | |||| |||| ||||| |||| ||||| || || | ||||| Sbjct 1183691 GTGACCATATTCAAAGTGAAAACCCTCGTGCAAGACAAGGAGGGTATACCGCCAGACCAG 1183632 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| || || |||||||| || || || || || | |||||||||| Sbjct 1183631 CAGCGCTTGATTTTTGCTGGAAAACAGCTCGAAGATGACCGGACGTTGGCCGACTACAAC 1183572 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||||| | |||| |||||| |||||||||| ||| Sbjct 1183571 ATCCAATCCCACTCGACCCTGCATCTGGTGCTGCGGTTG 1183533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167579446400