Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 123 3e-23 seq18 109 7e-19 seq10 95.1 2e-14 >seq2 Length=2059303 Score = 123 bits (136), Expect = 3e-23 Identities = 286/428 (67%), Gaps = 5/428 (1%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| || || || ||||||| || || | || |||||| ||||| ||||| || || Sbjct 918367 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCATAAAGAAGACATTGAGTCGGT 918308 Query 111671 TTTGGAGACATACGACAAGATGTCCCG-TGGTATGTTCATCCACGCAACACCAACCCTCT 111729 || || ||||| | ||||| | | ||| |||| |||||| || || ||| | | Sbjct 918307 GCTGACCACGTACGAGTACATGTCGCAATTGTAC-TTCACCCACGCGACCCCGACCTTGT 918249 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || || || | || ||| |||| || ||||| | | | ||||| | Sbjct 918248 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 918189 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| ||| | || || |||| ||| | | | ||||| || || |||||||||| Sbjct 918188 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 918129 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | || || || || ||||||| | || | |||| ||| ||| | || || | Sbjct 918128 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGGACCA 918069 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || || | || || ||||| |||||||| || || |||| ||| || ||||| | Sbjct 918068 ACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACG 918009 Query 111970 TAAACCAAGCTGGGCG---TCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||||| ||| | |||||||| || |||| | || | ||||| ||||| | Sbjct 918008 TGGACCAAGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCATG 917949 Query 112027 CGGATATC 112034 | || ||| Sbjct 917948 CCGACATC 917941 >seq18 Length=978767 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 102177 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 102236 || ||||| || |||| || || || || || ||||||||||| ||||| |||||| Sbjct 580789 GCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC 580848 Query 102237 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 102296 | || | ||||||||||||||| || |||||||| || || | ||||| ||||| || Sbjct 580849 TCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTC 580908 Query 102297 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| || ||||| || || ||| || ||||| Sbjct 580909 ATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGC 580943 >seq10 Length=1517454 Score = 95.1 bits (104), Expect = 2e-14 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 175994 GTAAAGATATACCTCGTTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTGA 176053 ||||||||||||| | | ||| ||||| || ||| ||| ||||| ||||||||| Sbjct 322428 GTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGA 322487 Query 176054 CCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACA 176113 ||| |||| | || || | ||||| || || | | |||| | ||||| |||||| Sbjct 322488 CCAGACGGAACCAGCAGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACA 322547 Query 176114 ATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCC 176173 |||||| | || || | || ||||| |||||||| | | || ||| | | Sbjct 322548 ATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCG 322607 Query 176174 GCCAACTGCGCCACTTTCATCTCATCCTTGA--GATTCTTGTGGAAA-CATGCGTACATA 176230 |||| || || |||||||| ||||||| | | || |||| ||||| ||| Sbjct 322608 GCCAGTTGGGCGACTTTCAT---TTCCTTGACCAAGTGCCGTCGAAAGCATGCAAACAAT 322664 Query 176231 ACCTTGCGTTGCGAAGGCTTGAGACCATC 176259 |||||||| || || |||||||| || || Sbjct 322665 ACCTTGCGCTGGGACGGCTTGAGTCCGTC 322693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735921001200