Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18 129 7e-25 seq2 107 2e-18 >seq18 Length=978767 Score = 129 bits (142), Expect = 7e-25 Identities = 352/528 (67%), Gaps = 17/528 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || ||||| | ||| ||||| || || || || || | | |||||| | ||||| Sbjct 581231 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCATGTCCATC 581172 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGA--TTGGTGGTTGACCAACTTGTTTCAGAAGAC 119325 ||||||| || || |||| ||| |||| || |||| || || || | Sbjct 581171 CAGTCAAAGGGGTTCTTGGCCGCAAAGAGCTTGGGGGCG--CCAAGCGATTCGAGGAGGC 581114 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||||| | |||| || |||||| |||| |||| ||||| || ||||| || | Sbjct 581113 GATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TTCC 581055 Query 119386 ACGGGAGAGCA-TCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAG 119444 ||||| ||| ||| | || | |||||||||||| || || || || || | Sbjct 581054 ACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCTCG 580995 Query 119445 TGAATAGTTTCTGTC-GATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACG---GCAAA 119500 || || | |||| || | ||||| | ||| || | || | | ||||| Sbjct 580994 TGGAT-GCGCGTGTCCGACAGCTTGTTG---ACGAGCTTCGAGTACATCAAGCATGCAAA 580939 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 || || || ||||| || || |||||||| || || ||| | || || ||||| Sbjct 580938 GTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCGGCAT 580879 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 ||| || | ||||| ||||||||||||| || || || || ||||||||||| || Sbjct 580878 GAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGCCTTC 580819 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG--ACTTGTCGAACCACTT 119677 ||| |||||| |||| | ||||| || | | | || | |||||| ||||||| Sbjct 580818 CACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGTCGCACCACTT 580759 Query 119678 GAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 ||| |||||||||||||| ||| | ||| || | |||| |||||| Sbjct 580758 GAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGGC 580711 >seq2 Length=2059303 Score = 107 bits (118), Expect = 2e-18 Identities = 192/279 (69%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 110764 CCCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||||||| ||| || ||||| || ||| | ||||| |||| ||||| ||||| || || Sbjct 917995 CCCGCCTTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCC 918054 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | ||| || || || || | ||| | || |||| || |||| |||||| | Sbjct 918055 GTTGGAGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTT 918114 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAAT 110942 || ||||| || || |||||||| ||| ||||| | | | ||| | || || Sbjct 918115 CACGCCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGAT 918174 Query 110943 ACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGG 111002 ||| || || ||||| |||| ||| | || ||||| || |||| ||||||||||| Sbjct 918175 ACCTTCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGG 918234 Query 111003 CGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 ||| || || ||||| | || || ||||| || |||| Sbjct 918235 CGTGCCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAA 918273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969852563000