Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 154 3e-32 seq34 125 2e-23 seq41 120 7e-22 >seq7 Length=1798773 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| ||||| || ||||| ||| || || | || ||||| | |||| Sbjct 108915 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 108856 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || || ||||| || ||||||||||| ||||||||||| ||| Sbjct 108855 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 108796 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| ||||| ||||| | ||| ||| |||||| || || || | |||||||| ||| Sbjct 108795 TGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTC 108736 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 108735 AACGTCTTCACGAAGATTTGCAT 108713 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| ||||| || ||||| ||| || || | || ||||| | ||| Sbjct 108688 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTG 108629 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | || || ||||| || ||||||||||| ||||||||||| || Sbjct 108628 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 108569 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| ||||| | ||| ||| |||||| || || || | ||||| || || Sbjct 108568 TTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTGCCGGT 108509 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 108508 GAGGGTCTTGACAAAGATCTGCAT 108485 >seq34 Length=561022 Score = 125 bits (138), Expect = 2e-23 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || || || ||||| || ||||| ||| |||| || | |||||||| | ||||| || Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAG-GTGCGGCCATCTTCCAATTGCTTGCC 36255 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | || || ||||| || || |||||||| |||||||| || |||||||| Sbjct 36254 GGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTT 36195 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||| ||||| | ||| || |||||| || | || | ||||| || |||||||| Sbjct 36194 GACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGT 36135 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 36134 CTTGACGAAAATCTGCAT 36117 >seq41 Length=515451 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | || || || ||||| || || || ||||||||| || || | Sbjct 381909 GAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCG 381968 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| || ||||| || || ||||| || ||||| || || ||||| || ||||| Sbjct 381969 ACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTC 382028 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || |||||||||||||| || || | |||||| || || || || || Sbjct 382029 CTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGT 382088 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || |||| || || || || | |||||| Sbjct 382089 GATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| || |||||||| || || |||||||| ||||| || || || |||||| Sbjct 383004 GCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 383063 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || | |||||| || || || ||||||| ||||| || || | || Sbjct 383064 ACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 383123 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 383124 TTGACGAAGATTTGCAT 383140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109469730280445