Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2 226 5e-54 seq18 201 2e-46 >seq2 Length=2059303 Score = 226 bits (250), Expect = 5e-54 Identities = 609/918 (66%), Gaps = 30/918 (3%) Strand=Plus/Plus Query 212948 GTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCT 213007 ||| | ||| || || | |||||||| |||||||| || || ||||| || ||| Sbjct 916932 GTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGA 916991 Query 213008 GGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCG 213067 || ||||||||||| |||| || || ||| | | ||||||| | | | | || Sbjct 916992 CGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGCTGGGCCACTTG-CG 917050 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || ||| ||||||||||| ||| ||| | | ||| ||||| || Sbjct 917051 CCTTGAGCGACGCCCAGTCCCA---------CAGATCCGACGGCGTGACGCCCCACAAGT 917101 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | |||| || |||| | ||||||||| ||||| ||| | ||| || || || Sbjct 917102 CGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGC 917161 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||||| || || ||||| | || ||| |||| ||||||||||||||| |||| | Sbjct 917162 TCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCT 917221 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||| ||| |||||| || ||| ||| | | |||| | |||| | || | Sbjct 917222 GGTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGAACGCGTCGG 917281 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCT 213366 | || || ||||| || || ||||| || | ||| | || ||| ||| || || || Sbjct 917282 CAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGC-GCGCTTCT 917340 Query 213367 CCAA-GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 | ||||||| ||||| |||||| | ||||||||||||| ||| |||| |||| | Sbjct 917341 TGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCACCTTGGCG 917400 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485 | | | ||||| | | ||||| ||| || || ||||||| | ||| Sbjct 917401 ATCTTGTGCAGGTGTGCAAAGTCAAACAC--AGC----GTTCTCGACAAACTTGGACAGC 917454 Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 |||||| |||| |||||| |||||||| || | | |||||||| ||||||||| Sbjct 917455 GCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCGATGATCTCG 917514 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| |||| | ||| |||||||||||||| ||||| ||||| ||||| Sbjct 917515 CAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTGGACTTGCCGTTGCAC 917574 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | ||||||||| |||||||| || | ||||| || | || ||| ||| || | | Sbjct 917575 GCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGACTCCAAGATGGCGAAC 917634 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGT--AGCCTCGTACTGTT 213723 || | | | ||||||| || || | || | ||| | | |||||||| | Sbjct 917635 CACAACTGCTGCGCCTTGA----TCGTCTTGC-GCGCACGGCCTTCCGACTCGTACTTGT 917689 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGA 213782 | | ||| | | ||| ||| ||||||| || ||| ||||| | || |||| Sbjct 917690 GGAACAGCGCCTCGAACTCGGCGCCCCAGCATTCGTGCAGCCCCGGCGCTTCAT-TGGGA 917748 Query 213783 CACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCA 213841 || | | ||||||||| ||| || ||| ||| | || ||||||||| ||||| | ||| Sbjct 917749 CAGAACAAGCTCCAGTCGCCGTTCGACTC-GACGCGCTTCATGAACAGATCCGGAATCCA 917807 Query 213842 CAGCGCGGTGAACAGGTC 213859 || ||| ||||| ||| Sbjct 917808 CATGGCGTAGAACAAGTC 917825 >seq18 Length=978767 Score = 201 bits (222), Expect = 2e-46 Identities = 567/863 (66%), Gaps = 27/863 (3%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| || || || | ||| ||||| | ||||| Sbjct 581232 GTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCATGTCCAT 581173 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || |||||||| | | | | | | ||| | | ||| || ||| | Sbjct 581172 CCAGTCAAAGGGGTTCTTGGCCGCAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGGCG 581113 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||||| ||||||| | ||||||||| ||||| ||| Sbjct 581112 ATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAGTTCCAC 581053 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 |||||| || | | ||||| |||||| |||| ||||| || || ||||||| | Sbjct 581052 GGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCTCGTG 580993 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| | || || | |||||| | | |||| | || | || ||| |||||||| Sbjct 580992 GATGCGCGTGTCCGACAGCTTGTTG---ACGAGCTTCGAGTACATCAAGCATGCAAAGTC 580936 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||||| ||||||||| || |||||| |||| ||||| | || || ||||||| Sbjct 580935 GCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCGGCATGAG 580876 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 ||| | || |||||||| || || | ||| || || |||||||||||||| ||||| Sbjct 580875 CCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGCCTTCCAC 580816 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAG 48321 || ||||||||| || | ||| || | | ||| ||||| | ||| || Sbjct 580815 GGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGTCGCACCACTTGAG 580756 Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAGCTT 48378 |||||||| ||||| | ||| ||| || || || || ||||| | | | | | | Sbjct 580755 CGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGATGGCGCGCAGCACGCGGTC 580696 Query 48379 CTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGA 48435 ||| ||| | |||| | || || |||| ||| | ||||| || || Sbjct 580695 CTT---CTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGC---GAGTACACTTCCGA 580642 Query 48436 GTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCAC 48495 ||| | || || || ||||| |||||||| || ||| | ||||| || ||||| Sbjct 580641 GTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCTCGGGGACTTGCAC 580582 Query 48496 TTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAA 48555 ||| || || || ||| || || ||||| || || || ||||||||||| Sbjct 580581 TTCATTGCTAAAGTTCATGGCCAGGTTTTCGTTGACGATGCCGTCGCTCGCAGCAAAGAA 580522 Query 48556 GGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT--TCCA---GCCC 48610 || || || || | | ||| ||||||||||| || | | | |||| || | Sbjct 580521 CGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGT--CCGACAACTTGATCCAGTCGCGC 580464 Query 48611 TGTACGTCTTTGC-CCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 || || ||| ||| ||| | ||| || ||||||||||| ||| ||||| || Sbjct 580463 TGATCG----TGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGCCTCGGCTTTCTT 580408 Query 48670 GTACATGCCCCATATGTCCGGAT 48692 |||||| |||| | ||||| || Sbjct 580407 GTACATTTCCCACACGTCCGCAT 580385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931523077126400