Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq18 118 1e-21 >seq2 Length=2059303 Score = 158 bits (174), Expect = 1e-33 Identities = 297/429 (69%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| || || || ||||||| || || | |||||||| ||||||||||| || || Sbjct 918367 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCATAAAGAAGACATTGAGTCGGT 918308 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 75329 || || ||||| | ||||| ||| ||| |||| ||||| || || ||| | | Sbjct 918307 GCTGACCACGTACGAGTACATGTCGCAATTGTAC-TTCACCCACGCGACCCCGACCTTGT 918249 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || | || || |||| |||||||| | ||| ||||| | Sbjct 918248 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 918189 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 | || ||| | |||||||| | || | | | | |||||| || || |||||||||| Sbjct 918188 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 918129 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 75508 | || ||||| || ||||||| | | | |||| || | || ||||| ||||| Sbjct 918128 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCT-ACATTCGCGGGACC 918070 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 || || || | || || ||||| |||||||| || || |||| ||| || ||||| Sbjct 918069 AACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTAC 918010 Query 75569 GTAAATCAA-GCGGGG--CGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 || | ||| |||||| ||||||||||| |||| | |||||||| || |||||| Sbjct 918009 GTGGACCAAGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 917950 Query 75626 GCCGATATC 75634 ||||| ||| Sbjct 917949 GCCGACATC 917941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 280/432 (65%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || || || || || || ||||| ||||||||||| || ||| ||| ||||| || Sbjct 917609 GAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAACCAGCAG 917550 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || |||| || |||||| || || | ||| || || | |||||||| ||| Sbjct 917549 AACCTGGGCACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGAGTACACGAGCAAG 917490 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 || || ||| || ||||| ||||| || ||||| || | |||| |||| ||| Sbjct 917489 GACGAAGTGGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCCAAGTTTGTC------GAG 917436 Query 76085 ACTCGCACT-TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| | ||||| | || | | || || | ||| | ||| | || || | || || Sbjct 917435 A-ACGCTGTGTTTGACTTTGCACACCTGCACAAGATCGCCAAGGTGGTCACGACCAACCT 917377 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCG 76203 ||| || || ||| || | ||| ||| | | ||||| || || ||||| Sbjct 917376 CAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAACAGCAACATGCG 917317 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||| | || || || | || || ||||| || || || | || || | | || Sbjct 917316 CCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATCCTCATGGGGTA 917257 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | | || || || | |||||||||| | |||| | |||||||||||||| || || Sbjct 917256 CTCGTTCGAGTCGGTGGAAGCCAAGGTGCTGAACCAGCAGATCTTTGAAACCATCTACCA 917197 Query 76324 CGCATCCCTGGA 76335 ||| || |||| Sbjct 917196 CGCCGCCATGGA 917185 >seq18 Length=978767 Score = 118 bits (130), Expect = 1e-21 Identities = 339/503 (67%), Gaps = 24/503 (5%) Strand=Plus/Plus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTT-CGCCGAGCGCCT 65084 ||||| || ||||| | || |||| |||| ||| | ||| | | |||||||||| | Sbjct 580741 AAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAG-CGCGCCGCGTACGCCGAGCGCAT 580799 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 | ||||| || ||||| || |||||||||||||| || |||||| | || | ||| Sbjct 580800 CGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATCTTTTG 580859 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | | |||||||| || |||||||| ||||| | ||||| || ||||| || || || || Sbjct 580860 GCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCGA 580919 Query 65205 TGAGGGTCTCCACCAGGAGTTTGC---CGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 || || || ||| || ||||| | || | || ||| || ||| | | | Sbjct 580920 CGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAG-CT---CGTCA-ACAAG 580974 Query 65262 CACTACCGAAAC---TATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 | | | || || ||||||| || || || || |||||||| ||||| ||| Sbjct 580975 CTGT-CGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAGATCGAGAAGCAGTT 581033 Query 65319 CATCTTGGA-CGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 | || || ||| || || ||||| || |||||||| | | |||| ||| | Sbjct 581034 TGTGAGCGAGAGCTTGCCCGTGGAA-CTCATTGGCATGAACTCGGCGCTCATGTGCGAAT 581092 Query 65378 ACATTGAGTATGTG-TCGGATCGTCTCCTCAAACAAGTTGGGGTGCC--ACCCATTTGGA 65434 ||||||||| | || | ||||| |||||| || |||| | || | | |||| Sbjct 581093 ACATTGAGT-TCTGCGCCGATCGCCTCCTCGAATCGCTTGGCGCCCCCAAGCTCTTTG-- 581149 Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTG-ATGGGAAGACCAACTTC 65493 || ||||| || ||||||| ||||| | | | | ||| | || || |||||||| Sbjct 581150 CGGCCAAGAACCCCTTTGACTGGATGGACATGA-TCTCATTGCAAGGCAAAACCAACTTT 581208 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 581209 TTCGAGAAGCGCGTGGGCGAGTA 581231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563373304800