Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq24 96.9 1e-14 seq7 91.5 4e-13 >seq24 Length=781221 Score = 96.9 bits (106), Expect = 1e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 410485 GTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGA 410544 ||| ||||||| |||||||| |||||| | ||||||||||| ||| ||||||||||||| Sbjct 720399 GTGTCCGCGTGGCGCAATGGCTAGCGTTTCGGACTTCTAATCCGGAGGTTGCGGGTTCGA 720340 Query 410545 GTCCCGTCGTGGGTAAttttttt 410567 |||||||||||| || ||||| Sbjct 720339 GTCCCGTCGTGGACGATCTTTTT 720317 >seq7 Length=1798773 Score = 91.5 bits (100), Expect = 4e-13 Identities = 173/250 (69%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || || || |||||||| || || | || || ||||||||||| ||||| | ||| Sbjct 51384 GTCTTGACGGCAGTATCAATGAGCCCTTCGCGCCCCCCCATAGCATGAAAGAAGAACTCC 51325 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 | || ||| | ||| | | ||| |||| ||||| || || | ||| ||| Sbjct 51324 T-GGGGCGTCAATCCCTTGAGGTACGAGTTCTCCACGAACCCGCGGGACTCTGGCCCCAA 51266 Query 302739 GTCGAACTTG--GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTT 302796 |||| |||| |||| || ||||| |||| || | | | ||||| || || ||||| Sbjct 51265 GTCGTCCTTGCCGTAA--TGAGGCAGCGTCCGGTGGTGAAATCCGTACGGAATGCGCTTC 51208 Query 302797 CCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCC 302856 || || ||||| ||||| || | |||| ||| ||||| ||||| || || | ||| Sbjct 51207 CCCTCCACGTTTTGCTGCCCGACACACGCAATAATCTGGGAAATGTTCAAGTACGACCCC 51148 Query 302857 TTGGAGCCAG 302866 ||||| |||| Sbjct 51147 TTGGACCCAG 51138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471801853851395