Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq7 134 1e-26 seq41 132 4e-26 seq34 122 8e-23 seq14 100 3e-16 >seq2 Length=2059303 Score = 158 bits (174), Expect = 1e-33 Identities = 723/1126 (64%), Gaps = 67/1126 (6%) Strand=Plus/Plus Query 138355 TTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGT-ATTGTTGCAATATT 138413 || ||||||||||| |||||||| | || | | |||||| || | || | || Sbjct 916747 TTGATCTCCCACACAGTCTTGTACACTTCCTTGACGT-TCGCGGGGATGGACGCGACGTT 916805 Query 138414 TTGAATGCTCCCGTTGGCC-GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCA 138472 ||||| ||| ||| | | |||| ||| | || | | ||| ||| ||||| || Sbjct 916806 TTGAACGCTGCCGCGGTCATGCAA-GATCTGGTTGCGGACGTCGCTGTTCCACAGACCCA 916864 Query 138473 ACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532 | ||||| || || |||| || |||| | || ||||| || || | || | Sbjct 916865 GCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAATTCGCCCGCGAGGACGC 916924 Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592 | || ||| |||||| || || ||||| | ||||||||||| || || ||||| | Sbjct 916925 GGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCG 916984 Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652 | |||| ||| || |||||| |||| | || || || || | ||||| | | Sbjct 916985 CGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGCTGGGCCA 917044 Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | | |||||||||||| ||||||||||| ||| || | | ||||| |||| Sbjct 917045 CTTGCGCCTTGAGCGACGCCCAGTCCCACAGATCCGACGGCGTGACGCCCCACAAGTCGT 917104 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTA-TACACCAAACTCT 138771 |||| ||| | ||| ||| |||| ||| ||||| | ||||| | | |||| Sbjct 917105 ACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGCTCT 917164 Query 138772 TGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGA 138831 || || | || || || || | || | | ||| || ||||| |||||||| Sbjct 917165 TG-GCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCTGG 917223 Query 138832 TTGAGCAATCGGGCCTCGGCGCTCTC------GTACGGCATGCGGAGCATCGTGAACGCG 138885 || |||| ||| || | ||| |||| |||| ||| |||||||| Sbjct 917224 TTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGA------TGAACGCG 917277 Query 138886 TCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG 138945 ||||| || ||||| ||||| | |||| ||||| ||||||| || ||| ||||| Sbjct 917278 TCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCA----TGTTGCTGTTGCG 917333 Query 138946 -GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCAC 139001 ||||| ||| || |||||||| || ||||| | ||||| | || | |||||| Sbjct 917334 CGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCAC 917393 Query 139002 CTTAG---TCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGAC 139058 ||| | || | ||| | || |||| || | | | | || Sbjct 917394 CTTGGCGATCTTGTGC---AGGTGTGCAAAGTCAAA-----CACAG----------CGTT 917435 Query 139059 GTCGACAAATTTGTTGACA--CAAATCGAGGCTATGTTGCACACCGCCACTTCGT-CGGG 139115 |||||||| ||| |||| || || || | ||||||||| |||||||||| | | Sbjct 917436 CTCGACAAACTTG--GACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTG 917493 Query 139116 GTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTG 139175 ||| |||| |||| || ||| ||||| || |||||||||| || | || || Sbjct 917494 CTCG-TGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTG 917552 Query 139176 TTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCAC 139235 || ||| || | ||| || ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 917553 CTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGAC 917612 Query 139236 TTGTGTCTCTATAAT---GAATTTGAAC--AAGTCCCTAGCTTGTATTTGACGCACGTAA 139290 ||| | ||| | || ||| ||| | ||| | | || || ||||| Sbjct 917613 TTGCGACTCCAAGATGGCGAACCACAACTGCTGCGCCTTGATCGTCTTGCGCGCAC---- 917668 Query 139291 AGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGA 139349 | | || ||||||||| | | | || | ||||| ||| | || || || Sbjct 917669 -GGCCTTCCGACTCGTACTTGTGGAACAGCGCCTCGAACTCG-GCGCCCCAGCATTCGTG 917726 Query 139350 AAGATCGCGACACTT-GTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCC 139408 || | || | ||| | ||||| | | ||| ||||||||| || ||||||| Sbjct 917727 CAG-CCCCGGCGCTTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCT 917785 Query 139409 TCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGC 139454 |||||||||||||||||||||||| ||| | | ||| ||||| || Sbjct 917786 TCATGAACAGATCCGGAATCCACATGGCGTAGAACAAGTCGCGGGC 917831 >seq7 Length=1798773 Score = 134 bits (148), Expect = 1e-26 Identities = 173/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || ||||| || || || |||||||| || ||| | Sbjct 108482 ACCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCT 108541 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || |||||||| |||||||| ||||| || || || || Sbjct 108542 TCCGACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGAC 108601 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GAT 24877 || || |||||||||||||| || || ||| |||| || || | || | ||| || Sbjct 108602 CAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGA--CG-GCCGCACGCTCAGCGAC 108658 Query 24878 TATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| |||||||| || || || ||||||||| | || |||| || ||| Sbjct 108659 TACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGC 108712 Score = 114 bits (126), Expect = 1e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||| | || || || || || |||||||| || ||| | || Sbjct 108713 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 108772 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || |||||||| |||||||| ||||| || || || || || Sbjct 108773 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 108832 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG-TCA--GATTAT 24880 || |||||||||||||| || || ||| |||| || || | || | ||| || || Sbjct 108833 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGA--CG-GCCGCACGCTCAGCGACTAC 108889 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || || || ||||| | || | |||||||| Sbjct 108890 AACATCCAAAAGGAGTCCACCCTCCATTTGGTCCTTCGCCTTCGCGGAGG 108939 >seq41 Length=515451 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || || || ||||| || || ||||| || || || | Sbjct 382128 GATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTC 382069 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || ||||||||||| ||||| |||||||| ||||| ||||| Sbjct 382068 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 382009 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | |||||||| || || || ||||| || | | | || ||||| || Sbjct 382008 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 381949 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| ||||| || || ||||||||||| Sbjct 381948 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 381913 >seq34 Length=561022 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || || ||| | || || ||| | || Sbjct 36117 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCC 36176 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || ||||||||||||||||| ||||| || || || || || Sbjct 36177 GACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 36236 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || || |||| ||| | | | || || || ||| Sbjct 36237 CAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTACAAC 36296 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||||||||| | ||||||||| | || ||||||| || || Sbjct 36297 ATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGTGG 36346 >seq14 Length=1282488 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | || ||| | || || ||||| || ||| | || || ||| | Sbjct 735059 ACCATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCA 735000 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | | || | || || ||||||||||| ||||| ||||| || || || || Sbjct 734999 TCCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGAC 734940 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||||| | ||||||||||| || || |||| || | | || || || Sbjct 734939 CAGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTAC 734880 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 ||||| |||||||||||||| | ||| | ||| | || |||| || || || Sbjct 734879 AACATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGGGGG 734827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892904193800