Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq41 113 3e-20 seq7 109 4e-19 seq14 95.1 8e-15 >seq41 Length=515451 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| || || ||| |||| | || |||||||||||||| || || Sbjct 381936 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAA 381995 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||| || | || | || |||||||| | || ||||| |||||| Sbjct 381996 GATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTT 382055 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | ||||| || || ||| || || | || || || || ||||| || ||||| || Sbjct 382056 GTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGAC 382115 Query 34966 AAAGATCTGCAT 34977 |||||| ||||| Sbjct 382116 AAAGATTTGCAT 382127 Score = 82.4 bits (90), Expect = 5e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 || ||||| || || || ||||| | || | || |||||||| | || || || ||| Sbjct 383004 GCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 383063 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 ||| | ||||| || || |||||| || | ||| |||||||| || ||||||||| Sbjct 383064 ACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 383123 Query 34961 TTTACAAAGATCTGCATG 34978 || || ||||| |||||| Sbjct 383124 TTGACGAAGATTTGCATG 383141 >seq7 Length=1798773 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| |||||| || ||||| ||||| || |||| | || Sbjct 108696 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108637 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| || |||||||| | || | || |||||||| Sbjct 108636 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108577 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| || ||| | ||||| || | || || || | || |||||| Sbjct 108576 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108517 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||||||||| ||||||||||||||| Sbjct 108516 TTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 108484 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | |||| |||||| || ||||| ||||| || |||| | || Sbjct 108924 AGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108865 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || ||||||| || |||||||| | || | || |||||||| Sbjct 108864 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108805 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||||| || ||| | ||||| || | || || || | || |||||| Sbjct 108804 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108745 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||| | ||||| || ||||| |||||| Sbjct 108744 TTTCCCGTCAACGTCTTCACGAAGATTTGCATG 108712 >seq14 Length=1282488 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| | |||| | || |||| |||||| ||||| ||| Sbjct 734866 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 734925 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | ||| |||||||| | || ||||| || ||| Sbjct 734926 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTG 734985 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | ||||| || | || ||||| | || ||||| || ||||| | ||||| || Sbjct 734986 TCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACG 735045 Query 34967 AAGATCTGCATG 34978 ||||| |||||| Sbjct 735046 AAGATTTGCATG 735057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689485566865