Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14 104 6e-17 seq41 96.9 8e-15 seq7 96.9 8e-15 seq34 89.7 1e-12 >seq14 Length=1282488 Score = 104 bits (114), Expect = 6e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||| | || || ||||| ||||| ||||| |||||| || ||| | |||| Sbjct 735042 CAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCCGACTCGATCGACAA 734983 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||| || || || ||||| ||| |||||| ||| | || ||||| Sbjct 734982 CGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAGCAACGCCTCATCTT 734923 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| |||||||| || | || ||| || |||||| |||| || || || Sbjct 734922 TGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAACATCCAAAAGGAATC 734863 Query 206364 TACTCTTCACCTTGT 206378 || | ||||| || Sbjct 734862 GACGTTGCACCTCGT 734848 >seq41 Length=515451 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || |||||||||||| | || || || || ||| Sbjct 382124 CAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCGGAC 382065 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | |||| || ||||||||||| || || || |||||||| || || ||| Sbjct 382064 TCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAA 382005 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || |||||||| ||||||| || | || || |||||||||| || Sbjct 382004 CGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAACATC 381945 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || || | || ||| | || || Sbjct 381944 CAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCG 381907 >seq7 Length=1798773 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| | || |||||| ||| ||| Sbjct 108488 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTTCCGAC 108547 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||||||||| || ||||| ||| || ||| || Sbjct 108548 TCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAG 108607 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || |||||||||||||| || | || | ||| |||||| || Sbjct 108608 CGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAACATC 108667 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || ||||| || || ||| Sbjct 108668 CAAAAGGAGTCCACCCTCCAC 108688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || ||||| || ||||| | || |||||| ||| ||| | | || Sbjct 108728 AAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCCGACTCGATTGACAAC 108787 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| || ||||| ||| || ||| || | | ||||| Sbjct 108788 GTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTTTGATCTTT 108847 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || | || | ||| |||||| |||| || ||||| Sbjct 108848 GCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAACATCCAAAAGGAGTCC 108907 Query 206365 ACTCTTCA 206372 || || || Sbjct 108908 ACCCTCCA 108915 >seq34 Length=561022 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || ||||| ||||| |||||| || ||| Sbjct 36120 CAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCCGAC 36179 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||| ||||| || ||||| || ||| ||| || Sbjct 36180 TCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAGCAG 36239 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| ||||| ||||| ||||||||||| | || ||| ||| |||||| || Sbjct 36240 CGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTACAACATC 36299 Query 206353 CAGAAAGAGTCTAC 206366 || || || || || Sbjct 36300 CAAAAGGAATCGAC 36313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181808156364035