Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq34 105 6e-18 seq18 105 6e-18 seq7 100 3e-16 seq2 84.2 2e-11 >seq34 Length=561022 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | ||||| || | | || || ||||| |||||||||||||||| ||| Sbjct 36337 CGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTG 36278 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | || || |||| | |||| | ||||| || || || || |||||| Sbjct 36277 CGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCT 36218 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || ||||| || | | || | | |||| ||| ||||| || | | Sbjct 36217 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAAC 36158 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| ||| || | |||||||||||| Sbjct 36157 GTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq18 Length=978767 Score = 105 bits (116), Expect = 6e-18 Identities = 334/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Plus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 |||||| | ||||| | |||||| ||| | | || |||| || ||||||||||| Sbjct 580741 AAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCGCGTACGCCGAGCGCATC 580800 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGCCGCCATTTTTTA 46894 || || ||||| || |||||| | || || || || ||| ||| |||| |||| Sbjct 580801 GTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCT-CCATCTTTTG 580859 Query 46895 CATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCG 46953 | || || | ||| | |||||||||||| ||||| ||||| | |||||||||| Sbjct 580860 GCTCAAGAAGCGCGGGC-TCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCG 580918 Query 46954 ACGAAGGACTACACACGGACTTTGCGTGTCTCTAT-TACAAGACGCGCGTGAATGAGAAA 47012 ||||||| || ||| |||||||| || || || ||| || || ||| || || Sbjct 580919 ACGAAGGCCTGCACTGCGACTTTGCATG-CTTGATGTACTCGAAGCTCGTCAACAAG--- 580974 Query 47013 TTAAACTCGGACACG---ATCC-TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGA 47068 ||||||||| |||| ||| ||| | | || |||| ||||| ||| | Sbjct 580975 ---CTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAG-ATCGAGAAGCA 581030 Query 47069 GTTTTTTACTGCG-GCGC-TGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGC 47126 |||| | | ||| | || ||||||| | | | ||||||||| | | |||||| Sbjct 581031 GTTTGTGA--GCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGGCGCTCATGTGC 581088 Query 47127 GAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTT 47186 ||||| |||||||| || ||||| || | | ||| || || || ||| Sbjct 581089 GAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCGCTTGGCGCCCCCAAGCTCTTT 581148 Query 47187 AATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTT 47246 || || || ||||| | ||| ||| || || | | ||||||||||| ||| Sbjct 581149 GCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAGGCAAAACCAACTTT 581208 Query 47247 TTCGAGAAACGAGTCGGAGAGTA 47269 |||||||| || || || ||||| Sbjct 581209 TTCGAGAAGCGCGTGGGCGAGTA 581231 >seq7 Length=1798773 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| ||||| |||||||||||||| | || || ||||| Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | |||| | |||||| || || || || |||||||| || || | Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||||| |||| | || | | |||| || ||||| |||| ||| | || || Sbjct 108801 ATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTT 108742 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||| || || | ||| || |||||| Sbjct 108741 CCCGTCAACGTCTTCACGAAGATTTGCATG 108712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| ||||| |||||||||||||| | || Sbjct 108706 ACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGT 108647 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| | ||| || || | | |||| | |||||| || || || || ||||| Sbjct 108646 GCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCC 108587 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||||| |||| | || | | |||| || ||||| |||| Sbjct 108586 TTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAG 108527 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || || || || || || || | || ||||||||| Sbjct 108526 CGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 108484 >seq2 Length=2059303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 286/437 (65%), Gaps = 9/437 (2%) Strand=Plus/Plus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCC---GC 147940 |||||||||| ||||| || || | ||| | ||| | || || || |||||||| || Sbjct 917940 AGATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGC 917999 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 | ||||| || | ||| | ||| ||| ||||| || | |||||| | ||| | | Sbjct 918000 CTTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGG 918059 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | |||||||| || | |||| | ||| || | | ||| | ||| |||| Sbjct 918060 AGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 918119 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 |||||||||| | |||| || ||| || || | |||||| |||||| || | Sbjct 918120 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 918179 Query 148121 CGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 ||||| |||| || | | |||| | || ||||| ||| ||| ||| |||| Sbjct 918180 CGATGGAATCGTCCTTCATGGACAAG-AGGAAGCACGACGACAGTTGAGGACGAGGCGTG 918238 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGATA 148238 || || ||| | ||| || ||||||| || || | ||| ||| | || || Sbjct 918239 CCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGCGACATGTACTCG-TA 918297 Query 148239 CGT-CTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCA 148297 ||| ||| | || | || ||||| || || ||||||| || |||||||||| || Sbjct 918298 CGTGGTCAGCACCGAC-TCAATGTCTTCTTTATGGATGCCCACAGCCACGCGCATGATCA 918356 Query 148298 TGTGCTGTGGTCGTTCG 148314 ||| || || || ||| Sbjct 918357 AGTGTTGGGGGCGCTCG 918373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606225370600