Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 351 1e-90 seq2 167 3e-35 seq7 123 4e-22 seq16 120 4e-21 seq19 118 2e-20 seq50 113 6e-19 >seq18 Length=978767 Score = 351 bits (388), Expect = 1e-90 Identities = 446/602 (74%), Gaps = 14/602 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCA-GC 1455773 ||||||| | || ||| ||||| ||||| || || ||||||| |||| | || || Sbjct 580332 CGAGCCGTTCCTTGTCGAGAACCCCAACCGGTTCGTGTTGTTCCCGATCC---AGCATGC 580388 Query 1455774 GGA--TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 ||| | |||||||||||| | |||| ||||||| ||| ||||| |||||||| ||| Sbjct 580389 GGACGTGTGGGAAATGTACAAGAAAG-CCGAGGCGAGCTTCTGGACTGCCGAGGAACTCG 580447 Query 1455832 ACCTCGGCGC-CGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATC 1455890 || | || || ||| | | ||||| | | || ||| |||||||| |||||| Sbjct 580448 ACTT-GGTGCACGATCAGCGCGACTGGATCAAGTTGTCGGACAACGAGCGCTTCTTCATC 580506 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 | |||||| || || || ||| || || ||||| |||||||| ||| ||||||||| Sbjct 580507 ACGCACGTGCTGGCGTTCTTT-GCTGCGAGCGACGGCATCGTCAACGAAAACCTGGCCAT 580565 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||||| || || || ||| | || ||||| || | ||||| |||||||| ||||| Sbjct 580566 GAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCGC 580625 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||||||||||||| ||| ||||||||||| |||||||| ||| |||||||||| Sbjct 580626 CATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACCC 580685 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||||||||||| | | | ||||||||||| || | |||| || | | ||||| Sbjct 580686 GACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCGTCATGCGCAAGGC 580745 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 | |||||||| | |||||| | |||| || || || | |||||||| ||||| Sbjct 580746 CAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCG--CGTACGCCGAGCGCATCGTC 580803 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | || |||| ||| || |||||||| ||||| || |||||| |||||||||||||| Sbjct 580804 GCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATCTTTTGGCTC 580863 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||||||| |||||||| || || | | | | |||||| | ||| |||||||| Sbjct 580864 AAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCG-AACGAACTCATCTCGCGCGACGA 580922 Query 1456310 AG 1456311 || Sbjct 580923 AG 580924 Score = 188 bits (208), Expect = 1e-41 Identities = 244/327 (75%), Gaps = 14/327 (4%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||||| |||||||| || || | ||| ||| |||||||||||||| |||| | ||| Sbjct 580928 TGCACTGCGACTTTGCATGCTTGATGTACTCGAAGCTCGTCAACAAGCTGTCGGAC-ACG 580986 Query 1456512 TGC--CCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTC 1456569 || ||| | |||| ||| ||| ||||| ||||||||||| ||||||| |||||| Sbjct 580987 CGCATCCACG-AGATTGTCGGCGATGCCGTTGAGATCGAGAAGCAGTTTGTGAGCGAGAG 581045 Query 1456570 GCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 |||| |||| ||||| ||||||||| | ||||||||||| | |||||||| || | Sbjct 581046 CTTGCCCGTGGAACTCATTGGCATGAAC-TCGGCGCTCATGTGCGAATACATTGAGTTCT 581104 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC---AA 1456686 | |||||| ||||| |||| |||| ||| || |||| || ||||| || Sbjct 581105 G-CGCCGATCGCCTCCTCGAATCGCTTGGC-GCCCCCAAGCTCT---TTGCGGCCAAGAA 581159 Query 1456687 CCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCG 1456746 ||| || |||||||| ||||||| | | ||||| ||||||||||||||| || Sbjct 581160 CCCCTTTGACTGGATGGACATGATCTCATTGCAAGGCAAAACCAACTTTTTCGAGAAGCG 581219 Query 1456747 CGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 ||| ||||||||| ||||| | ||||| Sbjct 581220 CGTGGGCGAGTACTCCAAGTCGGGCGT 581246 >seq2 Length=2059303 Score = 167 bits (184), Expect = 3e-35 Identities = 224/309 (72%), Gaps = 2/309 (1%) Strand=Plus/Minus Query 259874 GTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTC 259933 ||||| |||| |||||| ||||||||| || |||||| ||||| || || | Sbjct 918309 GTGCTGACCACGTACGAGTACATGTCGCAATTGTACTTCACCCACGCGACCCCGACCTTG 918250 Query 259934 TTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCC 259993 || || ||||||||||| || || || ||||||||||| || ||| |||||||| | Sbjct 918249 TTCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGAC 918190 Query 259994 GATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCC 260053 ||||| ||||| || ||||| ||||| | ||| | || ||| ||| |||||| ||| Sbjct 918189 GATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCT 918130 Query 260054 GGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTAC-GTGGCGGGCAC 260112 |||||||| || | | ||||| | |||||| | | |||| | ||||| || Sbjct 918129 GGCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGG-AC 918071 Query 260113 CAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTA 260172 |||||| |||||||| | | ||||||||||| || || |||||||| || ||||| Sbjct 918070 CAACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTA 918011 Query 260173 CGTCGACCA 260181 ||| ||||| Sbjct 918010 CGTGGACCA 918002 Score = 140 bits (154), Expect = 5e-27 Identities = 342/508 (67%), Gaps = 14/508 (3%) Strand=Plus/Minus Query 262912 CAGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAG 262971 ||||| ||| | ||||||||| ||||| |||| | |||||||||||| | || ||||| Sbjct 917039 CAGCACGGCATCCGCAACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAG 916980 Query 262972 ATCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTG 263031 ||||| ||||||| ||| | ||||| | ||| |||||| |||| |||||||| Sbjct 916979 ATCCTCGGCAACAACGAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTC 916920 Query 263032 CTCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGC 263091 ||| ||||||| || ||| | || ||| || || | ||| || | ||| || Sbjct 916919 CTCGCGGGCGAATTCACCATCGTTAACAAGTACTTGATGAAGGAGCTGATCTCGCTGGGT 916860 Query 263092 CTGTGGACGCCCGACTTTCGCGACCGGCTCATTGCGGCACAG-GGCTCGGTGCAGGGCTT 263150 ||||||| |||| | ||| ||| | || |||| || | ||| || || | | Sbjct 916859 CTGTGGAACAGCGACGTCCGCAACCAGATC-TTGCATGACCGCGGCAGCGTTCAAAACGT 916801 Query 263151 TGACGACGAGGAGGTGCCGCCCGATC-TCAAGGCTCTCTTCAAGACCGTGTGGGAGGT-G 263208 | || | | || | ||| | |||||| | | |||||| ||||||||| | Sbjct 916800 CG-CGTCCA------TCCCCGCGAACGTCAAGGAAGTGTACAAGACTGTGTGGGAGATCA 916748 Query 263209 CCCAACCGGGTGACCATTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAG 263268 ||| || | | | || |||| |||||||||| | | || ||| ||||| Sbjct 916747 AGCAAAAGGTCGTGC-TCGACTTGGCCGCCGACCGCGGTGCGTTCATCTGCCAAAGCCAA 916689 Query 263269 TCGCTCAACCTGTACCTCGCCGACCCGA-CGGCCGAGAGCATCACGTCGATGCACGCCTA 263327 | ||| || || |||||||||| | | | | ||| ||||||| |||||| || Sbjct 916688 AGCATGAACGTGCACATCGCCGACCCAAGCATCAGTAAGC-TCACGTCCATGCACTTTTA 916630 Query 263328 TGCGTGGCGTCGCGGCCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAA 263387 ||||||| |||||| | ||||| || |||||||| || ||| | || ||| || | Sbjct 916629 TGCGTGGAAGCGCGGCTTGAAGACCGGTATGTACTACCTCCGCTCGCGCCCCAAAGCTGA 916570 Query 263388 CGCCATTCAATTCACCGTCGATCAGGCG 263415 ||| ||||| ||||| || || || ||| Sbjct 916569 CGCGATTCAGTTCACGGTGGACCAAGCG 916542 >seq7 Length=1798773 Score = 123 bits (136), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||| ||| |||||||||||| | ||||| ||||||||| ||||| | | Sbjct 1308416 TCGTACTCGACCTACATCTACAAGGTGTTGAAGCAAGTGCACCCCGAAACCGGT-----A 1308470 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| ||||||| || |||| ||||| Sbjct 1308471 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGATATCTTCGAGCGCATT 1308529 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | || ||||| || |||| ||||||| |||| | | ||||| Sbjct 1308530 GCGTCGGAAGCCGGCAAGTTGAGCCGCTACAACAAGAAGTCCACGTTGTCGTCCCGCGAA 1308589 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| |||||||||||||| || | | || ||| |||||| ||| ||||| || || Sbjct 1308590 ATCCAAACCGCCGTGCGCCTCATGCTTCCTGGTGAATTGGCCAAGCATGCCGTGTCGGAA 1308649 Query 725136 GGCAC 725140 ||||| Sbjct 1308650 GGCAC 1308654 Score = 96.9 bits (106), Expect = 5e-14 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 1818067 CCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCA 1818126 ||||| | || |||||||| || || || | ||| | || || | || |||| Sbjct 48976 CCATGTTGAACGGCGTCACACGTTCTGGGACGGTCAAGTTCATGGCAATGCTGCGCGGCA 48917 Query 1818127 CGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGT 1818186 ||||||||| ||| || | | | |||||||| ||||||| | |||||||| ||||| Sbjct 48916 CGCCCACCTGGTCGATCGCTAAGTTGGGGTCGGCCGTGATGACTGTGCGCGCGGAAAAGT 48857 Query 1818187 TGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCC 1818232 ||||||||| |||||| |||||||||||| | || ||||| || Sbjct 48856 CGACGCGCTTCCCCATGAGATTGCCGCGGATACGCCCTTCCTTCCC 48811 >seq16 Length=1313120 Score = 120 bits (132), Expect = 4e-21 Identities = 177/248 (71%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||| | ||||| |||||||| ||||| | | Sbjct 1191058 TCGTACTCCACCTACATCTACAAGGTGTTGAAGCAAGTGCACCCTGAAACCGGT-----A 1191004 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| ||||||| || |||| ||||| Sbjct 1191003 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGATATCTTCGAGCGCATT 1190945 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGC 725072 | | || ||||| || |||| ||||||| || ||| | || ||| Sbjct 1190944 GCGTCGGAAGCCGGCAAATTGAGCCGCTACAACAAG---AAGTCGACCTTGTCGTCCCGC 1190888 Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 || ||||| |||||||||||||| || | | ||| ||| |||||| ||||||||| || Sbjct 1190887 GAAATCCAAACCGCCGTGCGCCTCATGCTTCCCGGTGAATTGGCCAAGCACGCCGTGTCG 1190828 Query 725133 GAGGGCAC 725140 || ||||| Sbjct 1190827 GAAGGCAC 1190820 >seq19 Length=952423 Score = 118 bits (130), Expect = 2e-20 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| ||| |||||||||||| | ||||| |||||||| ||| | | | Sbjct 18645 TCGTACTCCACCTACATCTACAAGGTGTTAAAGCAAGTGCACCCTGAAACTGGT-----A 18591 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| ||||||||||| || |||||||||| |||| |||||| Sbjct 18590 TC-TCCAAGCGCGGCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGCGCATC 18532 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | |||| ||||| || |||| ||||||| ||| | | ||||| Sbjct 18531 GCTTCCGAAGCCGGCAAGTTGAGCCGCTACAACAAGAAGTCCACCTTGTCGTCTCGCGAA 18472 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||| |||||||||||||| || | | |||||| |||||| ||| ||||| || || Sbjct 18471 ATCCAAACCGCCGTGCGCCTCATGCTCCCTGGCGAATTGGCCAAGCATGCCGTGTCGGAA 18412 Query 725136 GGCAC 725140 ||||| Sbjct 18411 GGCAC 18407 >seq50 Length=486813 Score = 113 bits (124), Expect = 6e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| |||||||| | |||||||| || || || ||||| | | |||||||| | Sbjct 156321 CGTCCTTGAGGCGCGTGTACCGCAGGATCGCGCACCGACTCTGGATCGGCTCGATGATCT 156380 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | | ||| ||||||||||||| || ||||||||||| || || | |||||||||| Sbjct 156381 TGGTCGAGTTGTTGCAGGCCAGCGCGAACCGCGTCGTGCTGCTAAACACTTCCATGGTCC 156440 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 ||||| || || || ||||| | ||| | ||||||| ||||| ||||| | |||| Sbjct 156441 GACGGAGCGCTTGCTGCGCCGCTGTCGTCATCGAGTCGGCTTCGTCTAGGATCACAATCT 156500 Query 333036 TGTGGCG 333042 | || || Sbjct 156501 TCTGTCG 156507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177730662715270