Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq34 143 2e-29 seq7 132 4e-26 seq14 129 5e-25 seq41 125 6e-24 >seq34 Length=561022 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || ||||| |||||||| |||||||| ||| |||||| || | || || Sbjct 36326 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 36267 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||| || ||||| ||||| ||||||||||| | || | || |||||||| Sbjct 36266 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 36207 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 |||||||||||| | |||| | | || |||| || |||||| |||| |||||| || | Sbjct 36206 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 36148 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || |||||||| || || || |||||||| Sbjct 36147 TCCCAGTCAAAGTCTTGACGAAAATCTGCAT 36117 >seq7 Length=1798773 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||||||||| |||||||| ||| | || || |||| ||| Sbjct 108921 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCC 108862 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | |||||| || ||||| ||||| ||||||||||| | |||| || |||||||| Sbjct 108861 AACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGA 108802 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||||||||||| |||| | | || |||| | |||||| || | |||||| || || Sbjct 108801 ATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTT 108743 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| || ||||| || || ||||| Sbjct 108742 TCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||||||||| |||||||| ||| Sbjct 108711 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108652 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || ||||| ||||| ||||||||||| | ||| Sbjct 108651 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108592 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||| ||||||||||||| |||| | | || |||| | |||||| Sbjct 108591 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCAC 108533 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || || || | || || ||||| |||||||| Sbjct 108532 GTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq14 Length=1282488 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | || ||||| |||||||| |||||||| || | Sbjct 734830 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 734889 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| ||||| || ||||| || | || |||||||||| ||| Sbjct 734890 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGA 734949 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||||||||||| |||| | | || |||| | |||||| Sbjct 734950 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTTGTCGATCGAGTCGGATGGTTCCAC 735008 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| ||||| |||||||| || || || || || ||||| Sbjct 735009 ATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq41 Length=515451 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | |||||||||||| | || |||||| || |||||||||||| | Sbjct 381901 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 381960 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||| ||||| |||||||| || | || ||||| || | ||| Sbjct 381961 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 382020 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||||||||| | |||| | | || ||| | || || Sbjct 382021 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCAAC 382079 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||||||||| ||||||| || || ||||| || ||||| Sbjct 382080 GTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788894841800