Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq34 159 3e-34 seq7 159 3e-34 seq14 127 2e-24 seq41 122 9e-23 seq2 87.8 2e-12 seq4 86.0 6e-12 >seq34 Length=561022 Score = 159 bits (176), Expect = 3e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| | ||| ||||||||||| ||||||||||||| | |||| | Sbjct 36334 AGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGG 36275 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | || ||||| ||||| ||||| |||||||| || ||||| |||||||| Sbjct 36274 CCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCC 36215 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||||| ||||| ||| | | |||||||| ||||||||| | || Sbjct 36214 TTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTG 36155 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || ||||| || |||||||| ||||| || Sbjct 36154 ATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 36114 >seq7 Length=1798773 Score = 159 bits (176), Expect = 3e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| |||||||| ||||||||||||| | ||| | ||| || | ||| Sbjct 108915 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGC 108856 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||| |||||||||||||| || || || |||||||| || |||||||| ||| Sbjct 108855 TTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTT 108796 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || ||| | | |||||| | |||||||||||| || ||||| || || || Sbjct 108795 TGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTC 108736 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| Sbjct 108735 AACGTCTTCACGAAGATTTGCAT 108713 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| |||||||| ||||||||||||| | ||| | Sbjct 108702 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGG 108643 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| ||||| |||||||||||||| || || || |||||||| Sbjct 108642 CCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCC 108583 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| ||||| || || ||| | | |||||| | |||||||||||| || Sbjct 108582 TTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTG 108523 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | || || || || || ||||| Sbjct 108522 ATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq14 Length=1282488 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||||||||| | ||| ||||||||||| ||||||||||| | |||| ||| | Sbjct 734839 AGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAAC-GTGCG 734897 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || | || ||||| ||||| || | || ||||| || || || || ||||| Sbjct 734898 GCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTC 734957 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || ||||| || || ||| | | |||||| | |||||| || | || Sbjct 734958 CTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGT 735017 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || ||||| |||||||| Sbjct 735018 GATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq41 Length=515451 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | || || || || ||||| || |||||||| |||| Sbjct 381901 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 381960 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || ||| || || || || || ||||| || | || |||||||| || || Sbjct 381961 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 382020 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || ||||| ||||| ||| | | ||| || | || ||| Sbjct 382021 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACG 382080 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || ||||| || || | || || || || |||||||| Sbjct 382081 TCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq2 Length=2059303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 282/428 (66%), Gaps = 15/428 (4%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 |||||| || | |||||||||| |||||||| || ||||||||||| | | || Sbjct 918363 CAACACTTGATCATGCGCGTGGCTGTGGGCATCCATAAAGAAGACATTGAGTCGGTGCTG 918304 Query 7624 GAAACGTACCAAATGATGTCT---TTGAAACAGTTTACGCACGCTTCGCCCACCATGTTT 7680 |||||| | ||||| ||| | || || ||||| | || ||| |||| Sbjct 918303 ACCACGTACGAGTACATGTCGCAATTGTAC---TTCACCCACGCGACCCCGACCTTGTTC 918247 Query 7681 GCCGCGGGCACAAACGCG-CCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 ||| ||||| | || |||||| |||| ||||| || | | ||||| || || Sbjct 918246 AACGCCGGCACGC-CTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACGA 918188 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 |||||| || || ||| |||| || | || || |||||||| | | || Sbjct 918187 TTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTGG 918128 Query 7800 CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCAT-CGTGTCCACCA 7858 ||| || || ||||| | || || | ||||||| | ||| ||| || | |||| Sbjct 918127 CGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGG-ACCA 918069 Query 7859 ACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATG 7918 |||| ||| ||| | |||||| | || |||||||| || | | || | | Sbjct 918068 ACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACG 918009 Query 7919 TAGACCAGGG---GGGAAAGCGCAAAGGCGCCGCT-GCCATCTATTTGGAGCCGTGGCAC 7974 | ||||| || |||||||||| |||| | || | ||||| || |||||||| ||||| Sbjct 918008 TGGACCAAGGCGGGGGAAAGCGC-AAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 917950 Query 7975 GCGGACAT 7982 || ||||| Sbjct 917949 GCCGACAT 917942 >seq4 Length=1887962 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 |||| ||| || || || || || | ||| ||||||||||| |||||| || | Sbjct 1183537 CGCAGCACCAGATGCAGGGTCGAGTGGGATTGGATGTTGTAGTCGGCCAAC-GTCCGGTC 1183595 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || ||||||||||| || ||||||||||| |||||||| || |||||||| || || || Sbjct 1183596 ATCTTCGAGCTGTTTTCCAGCAAAAATCAAGCGCTGCTGGTCTGGCGGTATACCCTCCTT 1183655 Query 134618 TTCTTG 134623 ||||| Sbjct 1183656 GTCTTG 1183661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393124904200