Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq18 102 1e-16 >seq2 Length=2059303 Score = 131 bits (144), Expect = 2e-25 Identities = 290/429 (68%), Gaps = 7/429 (2%) Strand=Plus/Plus Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGA---CGCCCAGC 111717 ||| || || ||||| ||||| | || | |||| || ||||| || | ||| | Sbjct 917941 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 918000 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 ||| | || ||||| || ||| |||| || || |||||||| ||||| || || | || Sbjct 918001 TTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 918060 Query 111778 TTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCC 111836 || || ||||| ||||| || | || |||| | | | ||||||| || | Sbjct 918061 GGACCCGTTGGTCCCGCGAATGT-AGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 918119 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 |||| || ||||||||||| || || |||||| | | | | || | |||||||| | Sbjct 918120 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 918179 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 ||| || || ||||| ||| | |||||||| |||| || || | || || | Sbjct 918180 CGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGC 918239 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTAT 112015 | || ||||| | ||| || || ||||| |||| ||| ||| ||||| | ||||| Sbjct 918240 CGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAA-GTACAATTGCGACATGTACTCGTAC 918298 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 || || || || ||||||||||| |||||||| | || || ||||||| || | Sbjct 918299 GTGGTCAGCACCGACTCAATGTCTTCTTTATGGATGCCCACAGCCACGCGCATGATCAAG 918358 Query 112076 TACTGTGGG 112084 | || ||| Sbjct 918359 TGTTGGGGG 918367 Score = 122 bits (134), Expect = 1e-22 Identities = 473/734 (64%), Gaps = 22/734 (3%) Strand=Plus/Plus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||| ||| |||| | | || || | |||| || ||||| |||| || || | Sbjct 917093 CCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACG 917152 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 |||||| | || | ||| | || |||| || ||||| || |||||||||| Sbjct 917153 GCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAA 917212 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAA 111047 |||| | |||| | |||||||||| | || || || | ||| | | || | Sbjct 917213 AGATCTGCTGGTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGA 917272 Query 111048 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTC 111107 | | || || || ||||| || || | || || || | ||| ||||| || || | Sbjct 917273 ACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGC 917332 Query 111108 GCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 |||| | | ||| ||| | || ||| || || ||| || || | || || | Sbjct 917333 GCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCA 917392 Query 111168 TCTTTGTGATTTCATGAAGTTTTTCATAATCAAA-AGTGCGAGTCTCTTCATTGACATAC 111226 ||| | ||| | || || | | || | ||||| | ||| |||| |||| || Sbjct 917393 CCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACAGCGT-TCTC------GACAAAC 917445 Query 111227 TTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCT 111286 || | || ||||| || ||||| ||||| || ||| || ||||| |||||||| Sbjct 917446 TTGGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCG 917505 Query 111287 AAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTC 111346 | || || || |||||||| ||| ||||| |||| |||| ||||| ||| Sbjct 917506 ATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTGGACTTG 917565 Query 111347 TTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGA 111406 |||||||||||||||||| |||||||| ||||| || || || || || | | Sbjct 917566 CCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGACTCCAAG 917625 Query 111407 ATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTC 111462 || || ||| ||| | ||| || | || | ||| || || || |||| ||| Sbjct 917626 ATGGCGAACCACAACTGCTGCGCCTTG----ATCGTCTTGCGCGCACGGCCTTCCGACTC 917681 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCT 111521 |||||| | | || || || ||||| | ||| | || ||| || || || || | Sbjct 917682 GTACTTGTGGAACAGCGCCTCGAACTCGGCGCCC-CAGCATTCGTGCAGCCCCGGCGCTT 917740 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTC 111579 | |||||||| | ||| | | | ||| ||| || ||||||||||| || || Sbjct 917741 CATTGGGACAGAACAAGCTCCA--GTCGCCGTTCGACTCGACGCGCTTCATGAACAGATC 917798 Query 111580 TGGAATCCACAGGG 111593 |||||||||| || Sbjct 917799 CGGAATCCACATGG 917812 >seq18 Length=978767 Score = 102 bits (112), Expect = 1e-16 Identities = 305/455 (67%), Gaps = 22/455 (5%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCAT-CAAGGCTAATGTTTTCCAT 122429 || || || || |||||||| || |||||||| || || | ||| | | | | ||||| Sbjct 581231 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGA-TCATGTCCAT 581173 Query 122430 AAAGTCAAATGGATTCTTCGCGTTCCAAATGGGT--GGCACCCCAACTTGTTTGAGGAGA 122487 ||||||| || ||||| || |||| | | || | |||| || |||||| Sbjct 581172 CCAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGG 581115 Query 122488 CGATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTT 122546 ||||| | || | |||||||||| ||| |||| | | |||||||| || ||||| || Sbjct 581114 CGATCGGCGCAGA-ACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TT 581057 Query 122547 ACATGGGAGTGCG-TCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGG 122605 || ||| || || | ||| ||||| |||||||| || || || || Sbjct 581056 CCACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCT 580997 Query 122606 CGTGGATA---GTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACG---G 122659 ||||||| || || | | | | | | ||| || ||| || | || | | Sbjct 580996 CGTGGATGCGCGTGTCCG-ACAGCTTGT-TGACG---AG-CTTCGAGTACATCAAGCATG 580943 Query 122660 CAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTG 122719 |||| || ||| || || || || || || || ||||| || ||||| | || || | Sbjct 580942 CAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCCCG 580883 Query 122720 GCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATAC 122779 ||||||| || |||||||| | |||| | || | |||||| || |||||||||||||| | Sbjct 580882 GCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGATGC 580823 Query 122780 CCTCCACACACGCAAACGCAAAAAGGCGTTCGGCG 122814 | ||||| || ||||| | | ||| |||||| Sbjct 580822 CTTCCACGGCGGCGAACGCGACGATGCGCTCGGCG 580788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025444916000