Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18 143 3e-29 seq2 138 1e-27 >seq18 Length=978767 Score = 143 bits (158), Expect = 3e-29 Identities = 343/504 (68%), Gaps = 26/504 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||| ||||| || || || | ||| ||| | ||||| Sbjct 581231 TACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCATGTCCATC 581172 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCT--GGCACTCCAATCTGTTTGAGGAGAC 129845 | ||||| |||||||| | |||| ||| || | |||| | || |||||| | Sbjct 581171 CAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCGAGGAGGC 581114 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | | | |||||||||| || |||| | | |||||||| || ||||| || | Sbjct 581113 GATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATGAG-TTCC 581055 Query 129906 ATGGG--AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 | ||| ||| | || | ||| |||||| || || || || || | || || | Sbjct 581054 ACGGGCAAGCTC-TCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGACAATCTC 580996 Query 129964 GTGAATG---GTCTCCGTGCCAGGTCTATTG-CGCAAAGTCTTGAAGAGTTC--CACG-- 130015 ||| ||| || |||| ||| | | ||| || || ||| |||| | || | Sbjct 580995 GTGGATGCGCGTGTCCGA--CAGCT-TGTTGACG---AG-CTTC--GAGTACATCAAGCA 580945 Query 130016 -GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||||| || ||| || || ||||| || ||||||||||| |||||||| |||| || Sbjct 580944 TGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACAGGCC 580885 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | ||| || || | || || || || ||||||||||| Sbjct 580884 CGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGAAGAT 580825 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAA 130194 || ||||| |||||||| | || ||||| || | | | | ||| | || | Sbjct 580824 GCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGTCGCA 580765 Query 130195 CCACTTCATCGCCCACTGCGCCTT 130218 |||||| | |||||| | ||||| Sbjct 580764 CCACTTGAGCGCCCAGTTGGCCTT 580741 >seq2 Length=2059303 Score = 138 bits (152), Expect = 1e-27 Identities = 692/1087 (64%), Gaps = 38/1087 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 117863 |||||||||| | ||| || |||| || |||||||||||||| || ||||| | Sbjct 916556 TGAACTGAATCGCGTCA-GCTTTGGGGCGCGAGCGGAGGTAGTACATACCGGTCTTCAAG 916614 Query 117864 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 || ||||||| ||||| | ||||| || | | ||| || | |||| | ||| Sbjct 916615 CCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGCTTACTGATGCTTGGGTCGGCGATG 916674 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 | |||||| |||||| ||| |||||| || || || || |||| || | | Sbjct 916675 TGCACGTTCATGCTTTGGCTTTGGCAGATGAACGCACCGCGGTCGGCGGCCAAGTCGAGC 916734 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || |||| |||||| |||||||||||| |||| | | ||| | | | ||||| Sbjct 916735 ACGACCTTTTGCTTGATCTCCCACACAGTCTTGTACACTTCCTTGACGTTCGCGGGGATG 916794 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATG--AGATCC---TTCATA--TC 118096 | ||| ||||| | | | ||| | |||| ||||| | | | || Sbjct 916795 GACGCGACGTTTTGAACG-------CTGCCGCGGTCATGCAAGATCTGGTTGCGGACGTC 916847 Query 118097 CTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAA 118156 | ||| ||||| | | | || |||| || | | ||| || || | || Sbjct 916848 GCTGTTCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAA 916907 Query 118157 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 118216 || ||||||||| ||| | || || |||| ||| | ||||| | | || || Sbjct 916908 TTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTT 916967 Query 118217 GTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 ||| || | ||| || || ||||| || ||||||||||| |||| ||| || ||| || Sbjct 916968 GTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCG 917027 Query 118277 GAGACCCTTTTC--CCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA--GTTGAG-CTTT 118331 || || | | || |||| ||||||| | ||||||| | | | | | Sbjct 917028 GATGCCGTGCTGGGCCACTTGCG--CCTTGAGCGACGCCCAGTCCCACAGATCCGACGGC 917085 Query 118332 GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 118391 || | ||| |||| || |||||| | || || | | || || ||||| | Sbjct 917086 GTGACGCCC---CACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAG 917142 Query 118392 GTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 118451 ||||| || || || | || || | ||| | || || | ||| ||||| || Sbjct 917143 GTCTCGTACGGCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAG 917202 Query 118452 ATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT-CG 118510 || |||||||| || | |||| ||||||| || | || || |||| ||| | Sbjct 917203 ATGGTTTCAAAGATCTGCTGGTTCAGCACCTTGGCTTCCACCGACTCGAACG--AGTACC 917260 Query 118511 GCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 118569 || | || || | || || || |||||||| || | || || ||||| || | || Sbjct 917261 CCATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCA 917320 Query 118570 TATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 | || || || || | | ||| ||| | || ||||| ||| | || || | Sbjct 917321 TGTTGCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGT 917380 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCT 118688 | | ||||| ||||| | ||| | || || | | | | ||||| || ||| |||| Sbjct 917381 TGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACAGCGT-TCTC- 917438 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 |||| |||| | || ||||| ||||||| || ||||| | || ||||| Sbjct 917439 -----GACAAACTTGGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTG 917493 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 |||||||| || || || ||||||||| || ||| || ||||||| ||||| Sbjct 917494 CTCGTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGC 917553 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||||| ||| |||||||||||||| |||||||| ||||| || || || | Sbjct 917554 TGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACT 917613 Query 118869 TGGGACT 118875 || |||| Sbjct 917614 TGCGACT 917620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618428745082600