Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq18 109 6e-19 seq10 95.1 1e-14 >seq2 Length=2059303 Score = 140 bits (154), Expect = 4e-28 Identities = 292/429 (68%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || || || ||||||||||||| | || || ||| ||||||||||| || || Sbjct 918367 CCCCCAACACTTGATCATGCGCGTGGCTGTGGGCATCCATAAAGAAGACATTGAGTCGGT 918308 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 || || ||||| | ||||| ||| ||| |||| ||||| || || ||| | | Sbjct 918307 GCTGACCACGTACGAGTACATGTCGCAATTGTAC-TTCACCCACGCGACCCCGACCTTGT 918249 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || || || | || ||| |||| |||||||| | ||| ||||| | Sbjct 918248 TCAACGCCGGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACG 918189 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 | || ||| | |||||||| | || | | | | |||||| || || |||||||||| Sbjct 918188 ATTCCATCGAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTG 918129 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACA 104518 | || ||||| || ||||||| | | | |||| || | || ||||| ||||| Sbjct 918128 GCGGCATTGGCGTGAACATCCACAACATCCGCGCCACCAACAGCT-ACATTCGCGGGACC 918070 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || || ||||| |||||||| || || |||| ||| || ||||| Sbjct 918069 AACGGGTCCTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTAC 918010 Query 104579 GTAAATCAAGCTGGGCG---TCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | |||| ||| | || ||||| || |||| | || | ||||| ||||| Sbjct 918009 GTGGACCAAGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCAT 917950 Query 104636 GCGGATATC 104644 || || ||| Sbjct 917949 GCCGACATC 917941 >seq18 Length=978767 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94801 GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC 94860 || ||||| || |||| || || || || || ||||||||||| ||||| |||||| Sbjct 580789 GCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGC 580848 Query 94861 GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTT 94920 | || | ||||||||||||||| || |||||||| || || | ||||| ||||| || Sbjct 580849 TCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTC 580908 Query 94921 ATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || ||||| || || ||| || ||||| Sbjct 580909 ATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGC 580943 >seq10 Length=1517454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 184/269 (68%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 168431 GTAAAGATATACCTCGTTTGAGACGCATCCTTACCACCCATGAGACGCGTACCAAACTGA 168490 ||||||||||||| | | ||| ||||| || ||| ||| ||||| ||||||||| Sbjct 322428 GTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGA 322487 Query 168491 CCACACGGCTCAAGAAGATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACA 168550 ||| |||| | || || | ||||| || || | | |||| | ||||| |||||| Sbjct 322488 CCAGACGGAACCAGCAGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACA 322547 Query 168551 ATCGTGTCCGCGAGAGAGACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCC 168610 |||||| | || || | || ||||| |||||||| | | || ||| | | Sbjct 322548 ATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCG 322607 Query 168611 GCCAACTGCGCCACTTTCATCTCATCCTTGA--GATTCTTGT-GGAAGCATGCGTACATA 168667 |||| || || |||||||| ||||||| | | || | |||||||| ||| Sbjct 322608 GCCAGTTGGGCGACTTTCAT---TTCCTTGACCAAGTGCCGTCGAAAGCATGCAAACAAT 322664 Query 168668 ACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 |||||||| || || |||||||| || || Sbjct 322665 ACCTTGCGCTGGGACGGCTTGAGTCCGTC 322693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583254712215400