Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-58 seq18 131 2e-25 >seq2 Length=2059303 Score = 241 bits (266), Expect = 1e-58 Identities = 506/741 (68%), Gaps = 24/741 (3%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 || ||||| |||||||| ||||||||| |||||||| || |||| |||||| || Sbjct 917615 CAAGTCGAAACCGGCACGCCGTACATGCTGTACAAGGATGCGTGCAACGGCAAGTCCAAC 917556 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||| ||||| | ||| ||||||||||||||||| |||| || ||||| || || | Sbjct 917555 CAGCAGAACCTGGGCACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGA-GTACAC 917497 Query 19913 AAGC-CGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAA 19971 ||| |||||| |||||||| || |||||||| | ||| | | || ||| | Sbjct 917496 GAGCAAGGACGAAGTGGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCCAAGTTTGTCGA 917437 Query 19972 GGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCT 20031 | | | || |||||||| | || || || | || ||| |||||| || || Sbjct 917436 GAACGCTGTGTTTGACTTTGCACACCTGCACAAGATCGCCAAGGTGGTCACGACCAACCT 917377 Query 20032 GAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCG 20091 || || ||||| |||| |||||| | | | | |||||||| || ||||| Sbjct 917376 CAACAAGGTGATCGACGTCAACTATTACCCCATCCAAGAAGCGCGCAACAGCAACATGCG 917317 Query 20092 CCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCT 20151 |||||| ||||||| ||| |||||||| ||||| ||||||| ||||| | | || Sbjct 917316 CCACCGCCCGATCGGGATTGGCGTCCAAGGCCTTGCCGACGCGTTCATCCTCATGGGGTA 917257 Query 20152 CTCATTCGA--CGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTAC 20209 ||| ||||| || | ||| | | | ||| ||| || ||||| || || | ||| Sbjct 917256 CTCGTTCGAGTCGGT-GGAAGCCAAG-GTGCTGAACCAGCAGATCTTTGAAACCATCTAC 917199 Query 20210 CACGCGGCCCTCCTGGAATCGTGC---GAACTCGCCAAAGAG-GACGGCCCGTACGAGAC 20265 ||||| || | ||||| ||| | ||||||||| ||||| | || ||||||||||| Sbjct 917198 CACGCCGC---CATGGAAACGTCCATGGAACTCGCC-AAGAGCCAAGGGCCGTACGAGAC 917143 Query 20266 GTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGA 20325 | | |||| || |||| | |||| | ||||| ||| ||||||||||||| Sbjct 917142 CTACGAGGGCTCCCCCGTGAGTCAGGGCAAGTTCCAGTACGACTTGTGGGGCGTCACGCC 917083 Query 20326 GAATGAGTTTTG-----GAGCG-CCCTCAAGGTTGAGATCAAGACC--CACGGGCTTCGC 20377 | || | || | ||| | ||||||| | | | || ||||| | ||| Sbjct 917082 GTCGGATCTGTGGGACTGGGCGTCGCTCAAGGCGCAAGT--GGCCCAGCACGGCATCCGC 917025 Query 20378 AACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAAC 20437 |||||| ||||| | || |||||||| || || || ||||| |||||| | || |||||| Sbjct 917024 AACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTCGGCAACAAC 916965 Query 20438 GAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 || | ||||||||| ||| ||||||| ||| || || || || || || ||| Sbjct 916964 GAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCGGGCGAATTC 916905 Query 20498 GTCATGGTAAACAAGCACCTG 20518 ||| || |||||| || || Sbjct 916904 ACCATCGTTAACAAGTACTTG 916884 Score = 199 bits (220), Expect = 4e-46 Identities = 489/729 (67%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 78495 GTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGG 78554 ||||| ||| ||| ||||| || ||| ||||| ||| ||||||| ||| |||| Sbjct 916893 GTTAACGATGGTGAATTCGCCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGG 916952 Query 78555 CTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGAC 78614 ||||| | |||||||| || | |||||| ||||| || || || |||||||| || | Sbjct 916953 CTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAA 917012 Query 78615 CAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAG----GCC--GTCCCA 78668 || || || || || | || ||| | | |||| || ||| |||||| Sbjct 917013 GAGCAGCGAGTTGCGGATGCCGTGCTGGGCCACTTGCGCCTTGAGCGACGCCCAGTCCCA 917072 Query 78669 AAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGA 78728 | || || || || ||||||| ||| || | | |||| | | || || Sbjct 917073 CAGATCCGACGGCGTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGA 917132 Query 78729 CCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG-ACTCGAGCAGGG 78787 |||| | | |||||||| | || | |||||||||||| |||| || || || Sbjct 917133 GCCCTCGTAGGTCTCGTACGGCCCTTGGCTCTTGGCGAGTTC-CATGGACGTTTCCATGG 917191 Query 78788 CCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCG--TC 78845 | |||||||| | | || ||||| || ||| ||| | | | ||| | || || Sbjct 917192 CGGCGTGGTAGATGGTTTCAAAGATCTGCTGGTTCAGCAC-CTTGGCTTCCAC-CGACTC 917249 Query 78846 GAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGG 78905 |||||| || | | ||||| | ||||| ||||| |||||||| || ||||||| Sbjct 917250 GAACGAGTACCCCATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGG 917309 Query 78906 TCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGAC 78965 ||||||||||||||||| || || || | | | | |||||| |||| ||||| || Sbjct 917310 GCGGTGGCGCATGTTGCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCAC 917369 Query 78966 GCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATG 79025 ||| ||||| |||||| ||| | | || || || | || || ||||| Sbjct 917370 CTTGTTGAGGTTGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACAC 917429 Query 79026 AT--TTCCTTTGATGAAAGTCGGTAGGCAC-AGCGATGCCAGGTTGCACACGGCCGTCTC 79082 | ||| | || ||| | || || | | || |||| ||||||||||||| || Sbjct 917430 AGCGTTC--TCGAC-AAACTTGGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTC 917486 Query 79083 GTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGAT 79142 |||| ||| | ||||||||| || |||||| || ||||||||||| ||||| | Sbjct 917487 GTCCTTGCTCGTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAG 917546 Query 79143 GTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGT 79202 ||||| ||||||| ||| |||| || || |||||||| |||||||||||| ||||| Sbjct 917547 GTTCTGCTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGT 917606 Query 79203 CTCAACCTG 79211 || || || Sbjct 917607 TTCGACTTG 917615 Score = 199 bits (220), Expect = 4e-46 Identities = 308/436 (71%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 79476 GATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCC 79535 ||||||||| ||||| ||||||| || ||||||||||| ||||||||||| || ||||| Sbjct 917941 GATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCCCGCC 918000 Query 79536 CTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGC 79595 |||| ||||| || || |||| |||||| || || |||||||| | ||| |||| || Sbjct 918001 TTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGGA 918060 Query 79596 GACGCCGTTCGTCCCGTTGAT-TCG-TGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT 79653 | ||||| |||||| || | | ||| | | || || ||||| | || | Sbjct 918061 GGACCCGTTGGTCCCGCGAATGTAGCTGT--TGGTGGCGCGGATGTTGTGGATGTTCACG 918118 Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 || ||||| || | ||||||||| ||| ||| || | ||| | || |||||||| || Sbjct 918119 CCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCT 918178 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTA 79773 ||||| || ||||||||||| | | |||||||| ||||| || || ||| Sbjct 918179 TCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTG 918238 Query 79774 CCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTAC 79833 ||||||||||| | |||||| |||||||| |||||| || ||| ||| |||||| Sbjct 918239 CCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGCGACATGTACTCGTAC 918298 Query 79834 GTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGG 79893 || | || | | ||| || |||||||| || || |||||||||| | | Sbjct 918299 GTGGTCAGCACCGACTCAATGTCTTCTTTATGGATGCCCACAGCCACGCGCATGATCAAG 918358 Query 79894 TACTGGGGCGTCTCGC 79909 | ||||| ||||| Sbjct 918359 TGTTGGGGGCGCTCGC 918374 Score = 132 bits (146), Expect = 5e-26 Identities = 235/339 (69%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 19192 GTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTC 19251 || |||||| |||||||| |||||| | ||||||||||| ||| || || |||| Sbjct 918277 GTACTTCACCCACGCGACCCCGACCTTGTTCAACGCCGGCACGCCTCGTCCTCAACTGTC 918218 Query 19252 GAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAA 19311 | || ||||| || | |||||||| || ||| || || |||||||| || | || Sbjct 918217 GTCGTGCTTCCTCTTGTCCATGAAGGACGATTCCATCGAAGGTATCTACGACACATTGAA 918158 Query 19312 GGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCG 19371 | | || ||| ||| ||||||||| | || || || || | || | || ||||| Sbjct 918157 GAACTGTGCGTGCATTTCCAAGTGGGCTGGCGGCATTGGCGTGAACATCCACAACATCCG 918098 Query 19372 GTCGAGTGGTACA-CGA-ATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATG 19429 | | ||| | | || ||||| ||||| || |||| ||| | || ||| Sbjct 918097 CGCCACCA--ACAGCTACATTCGCGGGACCAACGGGTCCTCCAACGGGATCATTCCCATG 918040 Query 19430 CTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGC 19489 || || || |||||| |||| || | ||||| |||| || || || || |||||||| Sbjct 918039 CTTCGGGTGTTCAACGACACTGCTCGCTACGTGGACCAAGGCGGGGGAAAGCGCAAGGGG 917980 Query 19490 TCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTC 19528 ||||||||||| ||| | ||||| ||||| || ||| || Sbjct 917979 TCGTTCGCCATGTACTTGGAGCCTTGGCATGCCGACATC 917941 >seq18 Length=978767 Score = 131 bits (144), Expect = 2e-25 Identities = 312/462 (68%), Gaps = 11/462 (2%) Strand=Plus/Plus Query 59677 ACGACGAGCAGCAT-TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 || |||||| || | ||||||| | || ||||| ||||| || ||||| || || || Sbjct 580487 ACAACGAGC-GCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATC 580545 Query 59736 GTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 || | ||||| | | |||||||||| ||| || || || | ||||||| || | Sbjct 580546 GTCAACGAAAACCTGGCCATGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGC 580605 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || || | || || ||| || ||| |||||||| || |||||||||| | || Sbjct 580606 TTTTATGGGTTCCAAATCGC-CATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCAT 580664 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-T 59913 ||| | | ||||||| ||| ||||||| | || | || ||||| || || | Sbjct 580665 CGACACATACATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCAT 580724 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCAT--- 59970 || || || | | || || | ||||| | ||||| || | | ||| Sbjct 580725 TCCGTGC-GTCATGCGCAAGGCCAACTGGGCGCTCAAGTGG-TGCGACAACAAGCGCGCC 580782 Query 59971 -CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCG 60029 | | || | || || | || || || ||||||||| ||||||||||| || ||| Sbjct 580783 GCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCG 580842 Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| | || || |||||||| ||||| || ||||||||||||||| ||||| ||| Sbjct 580843 TTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAAC 580902 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 || || || || || ||||| ||||| || || |||||| Sbjct 580903 GAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCA 580944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519074772400