Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 192 6e-44 seq10 150 2e-31 seq18 149 7e-31 seq4 91.5 2e-13 >seq2 Length=2059303 Score = 192 bits (212), Expect = 6e-44 Identities = 260/360 (72%), Gaps = 2/360 (1%) Strand=Plus/Minus Query 53246 ACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCT 53305 |||||||| | ||| ||| |||||| || ||||| || || ||| |||||||||| Sbjct 918300 ACGTACGAGTACATGTCGCAATTGTACTTCACCCACGCGACCCCGACCTTGTTCAACGCC 918241 Query 53306 GGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATC 53365 || ||| || ||||| ||||| |||||||| || | |||||||| || || ||| Sbjct 918240 GGCACGCCTCGTCCTCAACTGTCGTCGTGCTTCCTCTTGTCCATGAAGGACGATTCCATC 918181 Query 53366 GACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATC 53425 || || |||||||| || | ||| | ||||| ||| ||||||||| | || || || Sbjct 918180 GAAGGTATCTACGACACATTGAAGAACTGTGCGTGCATTTCCAAGTGGGCTGGCGGCATT 918121 Query 53426 GGTATCCACTGCTCGAACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACGGCGT 53484 || | || | ||| |||| || | | || | || || ||| || ||||| Sbjct 918120 GGCGTGAACATCCACAACATCCGCGCCACCAACAGCTACATTCGCGGG-ACCAACGGGTC 918062 Query 53485 CGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCA 53544 | || | || ||| | || ||||| || || |||||| |||| || || ||||| |||| Sbjct 918061 CTCCAACGGGATCATTCCCATGCTTCGGGTGTTCAACGACACTGCTCGCTACGTGGACCA 918002 Query 53545 GGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACAT 53604 || || || ||||||||||||||||||||||| ||| | ||||| ||||| |||||||| Sbjct 918001 AGGCGGGGGAAAGCGCAAGGGGTCGTTCGCCATGTACTTGGAGCCTTGGCATGCCGACAT 917942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| |||||| |||| || ||||| || ||||| || || |||||| | Sbjct 917033 GGCATCCGCAACTCGCTGCTCTTGGCCCCCATGCCCACGGCGTCCACCGCGCAGATCCTC 916974 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||||||||| | ||||||||| ||| ||||||| ||| ||||| ||| || Sbjct 916973 GGCAACAACGAATCAATCGAGCCGTTTACGTCCAACATGTACAGCCGCCGCGTCCTCGCG 916914 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 || || || ||| | |||||| || | | ||||| ||| Sbjct 916913 GGCGAATTCACCATCGTTAACAAGTACTTGATGAAGGAGCTG 916872 >seq10 Length=1517454 Score = 150 bits (166), Expect = 2e-31 Identities = 307/451 (68%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || |||||||| || || ||||| |||| | ||| |||| ||| || || || || Sbjct 322275 CCCGTGCCGATGCCGTCGGCGCCGTTCACCAACAACATGGGCAGAATCGGTACGAAATAC 322334 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||||| || || ||||| || |||||| | ||| | | | ||| |||| Sbjct 322335 ACGGGCTCTACGGGTACGCCGTCGTCGTGCACGTACTCCAAGAGCGTTTCGTCCGCCGCC 322394 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAAC-GCGTGAAGATGTATCGGGAGCTGGCCGC 152054 || ||| | | || || | || | |||| ||||| || |||| || ||||| Sbjct 322395 GGAAAGATCAGCCTCGTG-TACGGCTGGAGGTGCGTAAAGATATACCGGGCACTCGCCGC 322453 Query 152055 ATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||| || || |||||||| |||||||| ||||| || | || || | ||| Sbjct 322454 GTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGACCAGACGGAACCAGCAGTGGCACGTT 322513 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||||| ||| ||||| | ||| |||| || |||||||||| | || ||| || || Sbjct 322514 GTTGGAGCCGACGAAGTCCTGCGCCATGTTGACAATCGTGCTCAATAGCGACGCCTCGCC 322573 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||| || |||||||| || || ||| ||| || |||| || || || ||||| ||| | Sbjct 322574 GTGATGGTACGCCGTGTGTTCGGCGCAGTACCCGGCCAGTTGGGCGACTTTCATTTCCTT 322633 Query 152235 CGTCAGGTTCTTCTTGAGA-CAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 || || | | || | || || | | |||||||||||||| || || | |||| Sbjct 322634 GACCAAGTGCCG-TCGAAAGCATGCAAACAATACCTTGCGCTGGGACGGCTTGAGTCCGT 322692 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTC 152324 | | ||||| |||||||| || || |||| Sbjct 322693 CAATCACGTTCGGAATCGACCGGATGTTGTC 322723 Score = 91.5 bits (100), Expect = 2e-13 Identities = 300/461 (65%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 |||| || ||||| || || || || |||| || | ||| |||| | || ||| | Sbjct 322273 ACCCCGTGCCGATGCCGTCGGCGCCGTTCACCAACAACATGGGCAGAATCGGTACGAAAT 322332 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTG-ACGTACTTGAGCACCGCATTGTCACTC 117268 || | ||||| || | | |||||||| ||| ||||||| | | || | ||| | Sbjct 322333 ACACGGGCTCTACGGGTACGCCGTCGTC-GTGCACGTACTCCAAGAGCGTTTCGTCCGCC 322391 Query 117269 GGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCA 117328 | || || | | || |||| ||| | || || || || || | || || Sbjct 322392 GCCGGAAAGATCAGCCTCGTGTACGGCTGGAGGTGCGTAAAGATATACCGGGCACTCGCC 322451 Query 117329 GCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 || ||||| || || || ||||| || || || ||| ||| ||| || || | Sbjct 322452 GCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTGACCAGACGGAACCAGCAGTGGCACG 322511 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 ||||||| ||| || |||| || |||| |||||||||||| | || |||||| Sbjct 322512 TTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGACAATCGTGCTCAATAGCGACGCCTCG 322571 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC- 117507 || || || |||||||| || || || ||| || ||||| || || || ||||| || Sbjct 322572 CCGTGATGGTACGCCGTGTGTTCGGCGCAGTACCCGGCCAGTTGGGCGACTTTCATTTCC 322631 Query 117508 -TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGAC 117566 |||| || || | | ||| ||| | | ||||||||||| ||||| || | Sbjct 322632 TTGAC--CAAGTGCCGTCGAAAGCATGCAAACAATACCTTGCGCTGGGACGGCTTGAGTC 322689 Query 117567 CATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCAGCG 117607 | || ||||| || ||||| || ||||| |||||| Sbjct 322690 CGTCAATCACGTTCGGAATCGACCG---GATGTTGTCAGCG 322727 Score = 82.4 bits (90), Expect = 8e-11 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 118107 GTTGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTA 118166 ||| |||||| | |||| | || | | |||||| | |||| |||| || | Sbjct 323661 GTTTGAGCCCCAAGATCGTACAGAGATGGCTAAATTCAGCGTTTTTTGTCAGTTGCGTGT 323720 Query 118167 TGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCAC 118226 ||||||||| || |||||| | || ||||||| || ||||||||| | || | Sbjct 323721 CGGTGGCGTCGCGGACGTTGAGGAATTTTCCCCGCAACGGGAACACGCCATATGCATCCC 323780 Query 118227 GGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAA 118286 ||||||||||||||||| || | || || || || || || || || || || | || Sbjct 323781 TTCCCACAACGCTCAAGCCAGCGACCGCGAGCGCTTTGGCTGAATCGCCTTCAGTCAAAA 323840 Query 118287 TAAGAGTGCACTCG-GTGCTGCGATGA-GTACCGGCCCAATTAGCATCATCCAGCTTCGG 118344 | | ||||||| | ||||| | || || || ||||| || || || || ||||| || Sbjct 323841 TCAACGTGCACTTGTGTGCTTTG--GACGTGCCTGCCCAGTTGGCGTCCTCAAGCTTGGG 323898 Query 118345 AAC 118347 || Sbjct 323899 CAC 323901 >seq18 Length=978767 Score = 149 bits (164), Expect = 7e-31 Identities = 564/863 (65%), Gaps = 29/863 (3%) Strand=Plus/Minus Query 74455 ACTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGT 74514 |||| || || || || || ||||| || ||||||||||| || |||| ||| ||||| Sbjct 581239 ACTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCA 581180 Query 74515 TCTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCT---CCCCAAACTGTG 74571 | ||||||||||| || |||||||| || || ||| || ||| | |||| | | Sbjct 581179 TGTCCATCCAGTCAAAGGGGTTCTTGGC--CGCAAAGAG-CTTGGGGGCGCCAAGCGATT 581123 Query 74572 CCATGAGGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGA 74631 | | ||||||||| || || | |||||| | ||| ||| | |||||| | Sbjct 581122 CGAGGAGGCGATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAA 581063 Query 74632 TGAGTTTGCACGGCAGTGC-CTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG- 74689 |||||| ||||| || |||| | | ||||| |||| | ||| || ||| | Sbjct 581062 TGAGTTC-CACGGGCAAGCTCTCGCTCACAAACTGCTTCTCGATCTC--AACGGCATCGC 581006 Query 74690 -GACAATCTTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCA 74748 |||||||| ||| ||| || | ||| | || | ||||| | ||| Sbjct 581005 CGACAATCTCGTGGATGCGCGTGTCCGACAGCTTGTTGACGAGCTTCGAGTACA---TCA 580949 Query 74749 CG---GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAA 74805 | ||||| || ||| |||||| || | || | ||| ||||| ||||| | Sbjct 580948 AGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACGACA 580889 Query 74806 GGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGA 74865 |||| ||||| || || |||||||| | ||||||||||| ||||| ||||| ||||| Sbjct 580888 GGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGAAGA 580829 Query 74866 AGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGAAGT 74923 |||||||||| || || || ||||| | ||| | ||| | ||| || | || Sbjct 580828 AGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCTTGTTGT 580769 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCT 74981 | ||| | | ||||| | || || || ||| |||| || | || ||||| || Sbjct 580768 CGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGA-CGCACGGAATGGTTTCGATGGCG 580710 Query 74982 TGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | | | || ||||||| ||||| ||||||| | |||| || | || ||||| Sbjct 580709 CGCAGCACGCGGTCCTTCTCGGTCGGG-TCCTTGATGTATGTGTCGATGAGGAGCGAGTA 580651 Query 75041 CGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | ||||| || || ||| || ||| ||| || | || || | |||||||| | Sbjct 580650 CACTTCCGAGTGGATGTTTTCGATG-GCGATTTGGAACCCATAAAAGCATCGCGCCTCGG 580592 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 | || || || || ||| |||||| | | || || ||||||||||||| | Sbjct 580591 GGACTTGCACTTCATTGCTAAAGTTCATGGCCAGGTTTTCGTTGACGATGCCGTCGCTCG 580532 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 | || || || ||||| || |||| ||| |||||| | ||| | | ||| || Sbjct 580531 CAGCAAAGAACGCCAGCACGTGCGTGATGAAGAAGCGCTCGTTGTCCGACAACTTGATCC 580472 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | || | | || | |||| || | |||||| | |||||||| ||| | ||| || Sbjct 580471 AGTCGCGCTGATCGTGCACCAAGTCGAGTTCCTCGGCAGTCCAGAAGCTCGC-CTCGGCT 580413 Query 75280 TT-TTGTACAAAGACCACAAGTC 75301 || ||||||| ||||| ||| Sbjct 580412 TTCTTGTACATTTCCCACACGTC 580390 >seq4 Length=1887962 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 152047 CTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGG 152106 ||||| ||||||||||| || || ||||| |||||||| || ||| | || | | Sbjct 1154346 CTGGCGGCATCCTTGCCCCCCATGAGTCGCGTCCCAAACTGGCCGTTGGGTGCCAGCAAG 1154405 Query 152107 TTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTC 152166 |||| ||||||| || ||||| || || |||| | || ||||| || ||| || Sbjct 1154406 TTGATGTTGTTGCTTCCAACGAAGTTTTGGGCCATGCCGATGATGGTGCCGTGGAGATTC 1154465 Query 152167 GCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTC 152226 |||| ||||| || ||||| | ||||| | ||||| |||| || ||||| || || Sbjct 1154466 ACTTCGCCGTGATGGTACGCTGAATGCTCTGAAATGTACCCCGACAGTTGCGCGACTTTG 1154525 Query 152227 ATGTC 152231 || || Sbjct 1154526 ATCTC 1154530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210288433000