Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 241 1e-58 seq10 156 5e-33 seq41 129 7e-25 seq7 129 7e-25 seq14 95.1 1e-14 seq4 93.3 5e-14 seq34 84.2 2e-11 >seq2 Length=2059303 Score = 241 bits (266), Expect = 1e-58 Identities = 665/997 (67%), Gaps = 43/997 (4%) Strand=Plus/Plus Query 80303 TCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTC 80362 |||| | ||| ||| | ||| || |||| | || |||||||| ||| || || | Sbjct 916853 TCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAATTCGC 916912 Query 80363 CCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTC 80422 |||||||| ||| || |||| ||| | || | ||||| | || |||||||| | Sbjct 916913 CCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTGC 916972 Query 80423 CGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGC 80482 |||||||||| || ||| |||||| ||||| ||| | | | ||| || || || | || Sbjct 916973 CGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGC 917032 Query 80483 CGTGCTT-----CTTGATATCCTCGCGCAAATCTGA---CCAAAAATCAACCCCAACGCT 80534 |||||| |||| ||| | || | | | ||| | ||| | ||| Sbjct 917033 CGTGCTGGGCCACTTGCG--CCTTGAGCGACGCCCAGTCCCACAGATC-----CGACGGC 917085 Query 80535 GTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTC 80592 ||||| |||||| ||||| ||| || |||||| | | || || ||| || | ||| Sbjct 917086 GTGACGCCCCACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTC 917145 Query 80593 TCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC---TCCATAAGGGCCGCGTGATAA 80649 |||||||| || | ||||||| || || ||| ||||| ||| ||||| || Sbjct 917146 TCGTACGGCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCAT---GGCGGCGTGGTAG 917202 Query 80650 ATGCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCC 80708 ||| ||||||| || ||||| |||| | || | |||||||| | || Sbjct 917203 ATGGTTTCAAAGATCTGCTGGTTCAGCACCTTG-GCTTCCACCGACTCGAACGAGTACCC 917261 Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 ||| | |||||| |||| || ||||| || ||||| || ||||||||||||||||| | Sbjct 917262 CATGAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCAT 917321 Query 80769 GTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGT 80827 ||| | | || || | || | || |||||| |||| ||||| || ||| |||| Sbjct 917322 GTTGCTGTTGCGCG-CTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGT 917380 Query 80828 TGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCCCT 80884 || || || ||| | | | || || | |||||| || |||| | Sbjct 917381 TGGTCGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACAGCGTTCTCG- 917439 Query 80885 TCACAAATGCCGGAAGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTC--AGCAT 80941 ||||| ||| || | | |||||||| |||||||||||||| || || || | Sbjct 917440 --ACAAACTT-GGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGC-T 917495 Query 80942 CTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCT 81001 | || |||||| ||| || |||||| || || ||||| || || |||||||| | || Sbjct 917496 C-GTGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCT 917554 Query 81002 GGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCT 81061 |||| |||||| ||||||| || |||||||| ||||||||| || ||||| ||||| | Sbjct 917555 GGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTT 917614 Query 81062 GTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTT 81121 | |||| | ||||||| ||| | || ||||||||| | |||||| ||||| Sbjct 917615 GCGACTCCAAGATGGCGAACCACAACTGCTGCGCCTTGATCGTCTTGCGCGCACGGCCTT 917674 Query 81122 CGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCT 81180 | | | | |||||| | | ||| | ||||||| ||| || ||| ||| | | Sbjct 917675 CCGACTCGTACTTGTGGAACAGC-GCCTCGAACTCGGCGCCCCAGCATTC-GTGCAGCCC 917732 Query 81181 GGGCAC-TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAA 81239 ||| | || || || || | || | ||||||| || ||| || ||||||||| Sbjct 917733 CGGCGCTTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCTTCATGAA 917792 Query 81240 AGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGG 81276 || || ||||| | |||| ||||| ||||||| Sbjct 917793 CAGATCCGGAATCCACATGGCGTAGAACAAGTCGCGG 917829 >seq10 Length=1517454 Score = 156 bits (172), Expect = 5e-33 Identities = 302/443 (68%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 ||||| ||||| ||||| ||||| |||||||| || ||||||||||| | | || Sbjct 322714 CGGTCGATTCCGAACGTGATTGACGGACTCAAGCCGTCCCAGCGCAAGGTATTGTTTGCA 322655 Query 32023 TGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGC 32081 ||| | | || || || || || ||||| || || || ||| | || ||| || Sbjct 322654 TGCTTTCGACGGCACTTGGTCAAG-GAAATGAAAGTCGCCCAACTGGCCGGGTACTGCGC 322596 Query 32082 AGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGC 32141 || || ||||| || || ||||||||||||||||| | |||| ||||||||| | || Sbjct 322595 CGAACACACGGCGTACCATCACGGCGAGGCGTCGCTATTGAGCACGATTGTCAACATGGC 322536 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 ||| |||| ||||| | || ||| || | || | || ||||| |||||||| || Sbjct 322535 GCAGGACTTCGTCGGCTCCAACAACGTGCCACTGCTGGTTCCGTCTGGTCAGTTTGGCAC 322476 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC 32261 |||||| || || ||||| || ||||| |||| || ||||| || | ||| || Sbjct 322475 GCGGCTCCAGGGCGGGAAGGACGCGGCGAGTGCCCGGTATATCTTTACGCACCTCCAGCC 322416 Query 32262 TTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGA 32321 | ||| | ||| || || ||||||| || | | ||||| || || Sbjct 322415 GTACACGAGGCTGATCTTTCCGGCGGCGGACGAAACGCTCTTGGAGTACGTGCACGACGA 322356 Query 32322 CGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGG 32381 ||| | || ||||| |||| | | ||| | || || ||| | ||||||||||| Sbjct 322355 CGGCGTACCCGTAGAGCCCGTGTATTTCGTACCGATTCTGCCCATGTTGTTGGTGAACGG 322296 Query 32382 TGCAGAAGGCATCGGAACGGGGT 32404 || || |||||||| ||||||| Sbjct 322295 CGCCGACGGCATCGGCACGGGGT 322273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 31207 CCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATT 31266 || ||||| || |||||||||||||| || || ||| | ||| |||||||| | ||| Sbjct 323898 CCCAAGCTTGAGGACGCCAACTGGGCAGGCACGTCCAAAGCACACAAGTGCACGTTGATT 323839 Query 31267 ATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGC 31326 | || || || || || || || ||||| || | ||||||||||| |||||||| | Sbjct 323838 TTGACTGAAGGCGATTCAGCCAAAGCGCTCGCGGTCGCTGGCTTGAGCGTTGTGGGAAGG 323779 Query 31327 AATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCG 31384 |||| | || ||||| ||| | || || || | ||||| || |||||| ||| Sbjct 323778 GATGCATATGGCGTGTTCCCGTTGCGGGGAAAATTCCTCAACGTCCGCGACGCCACCG 323721 >seq41 Length=515451 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || ||||| || || ||||| || |||||| | Sbjct 382127 ATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCG 382068 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || ||||||||||| ||||| ||||| || ||| Sbjct 382067 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAG 382008 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || || || ||||| || |||||||| || || | ||| ||||| ||| || || || Sbjct 382007 CAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGC-GATTACAA 381949 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||| | || ||||| || || || || Sbjct 381948 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGG 381901 >seq7 Length=1798773 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || || || || | Sbjct 108485 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTTCC 108544 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || ||||| || ||||| |||||||| || ||||| || |||||| Sbjct 108545 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 108604 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | || |||||||| ||||| | || || | || || || ||| ||||| || Sbjct 108605 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGC-GACTACAA 108663 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || || | || | ||||| || ||||| Sbjct 108664 CATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 108711 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || |||||| | || || ||||| || || || || || || | Sbjct 108713 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 108772 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || ||||| || ||||| |||||||| || ||||| || |||||| Sbjct 108773 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 108832 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||| | || |||||||| ||||| | || || | || || || ||| ||||| || Sbjct 108833 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGC-GACTACAA 108891 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || ||| | ||| | || |||||||| || Sbjct 108892 CATCCAAAAGGAGTCCACCCTCCATTTGGTCCTTCGCCTTCGCGGAGG 108939 >seq14 Length=1282488 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||| | || || || || || || | || || || || Sbjct 735056 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 734997 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || ||||| || || ||||||||||| || ||||| || |||||| Sbjct 734996 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAG 734937 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || ||||| || |||||| | || || | || || | ||||| || Sbjct 734936 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAAC 734877 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || | || || || | || || || ||||| Sbjct 734876 ATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGG 734830 >seq4 Length=1887962 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || || || ||||| |||||||| ||| | ||||||| | || || || |||||| Sbjct 1154530 GAGATCAAAGTCGCGCAACTGTCGGGGTACATTTCAGAGCATTCAGCGTACCATCACGGC 1154471 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 || | | ||||| |||||||| || | | || || ||||| || || || ||| Sbjct 1154470 GAAGTGAATCTCCACGGCACCATCATCGGCATGGCCCAAAACTTCGTTGGAAGCAACAAC 1154411 Query 32167 CTGAACTTACTCG-AGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGC 32225 | ||||| || | | ||| | || ||||||||||| || ||| || ||||||||||| Sbjct 1154410 ATCAACTTGCTGGCACCCAAC-GGCCAGTTTGGGACGCGACTCATGGGGGGCAAGGATGC 1154352 Query 32226 TGCGAGCTCCCGTTA 32240 || || | ||||| Sbjct 1154351 CGCCAGTGCTCGTTA 1154337 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 || ||||||||||| || || |||||||||||||| | ||||||||||| || || ||| Sbjct 1183661 CAAGACAAGGAGGGTATACCGCCAGACCAGCAGCGCTTGATTTTTGCTGGAAAACAGCTC 1183602 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || ||||| || || | || ||||| || ||||| | || || || ||||| || Sbjct 1183601 GAAGATGACCGGACGTTGGCCGACTACAACATCCAATCCCACTCGACCCTGCATCTGGTG 1183542 Query 27616 TTGCGTCTTCGCGG 27629 |||| | ||||| Sbjct 1183541 CTGCGGTTGCGCGG 1183528 >seq34 Length=561022 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| | || || ||||| || || | || || || | Sbjct 36117 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCC 36176 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| || | ||| || || || |||||||| || || || || |||||| Sbjct 36177 GACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 36236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| | || ||||| || |||||| | || |||| || ||| | ||| ||||| || Sbjct 36237 CAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGC-GACTACAA 36295 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || | || | || | || || |||||||| Sbjct 36296 CATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGG 36343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304447385200