Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 8e-15 seq41 93.3 3e-14 seq34 89.7 3e-13 >seq7 Length=1798773 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | ||||||||||| ||| ||||||||| ||||| || || Sbjct 108939 CCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108880 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || ||||| || |||||||| ||||| || || Sbjct 108879 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108820 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||||| || ||| | ||| | ||| ||||| Sbjct 108819 ATGCCTTCCTTGTCTTGAATCTTTTG-CTTCACGTTGTCAATCGAGTCGGAAGGTTCCAC 108761 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || || || || ||||| ||||| || || |||||| Sbjct 108760 GTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCATG 108712 >seq41 Length=515451 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||||||||||||| || || |||||| || ||||| ||||| Sbjct 381901 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 381960 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| ||||| || || ||||| || | || || || || || || Sbjct 381961 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 382020 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||||||||| || ||| | || | ||| | ||| || Sbjct 382021 ATTCCTTCCTTGTCCTGGATCTTTTG-CTTGACGTTGTCGATCGAGTCCGAGGGCTCAAC 382079 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || |||||||| || || | || || ||||| || ||||| Sbjct 382080 GTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq34 Length=561022 Score = 89.7 bits (98), Expect = 3e-13 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATC--TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAA 34573 |||||||| ||||| || || | || ||| || | ||||| | ||| || ||||||| Sbjct 36307 TCCTTTTGGATGTTGTAGTCGCTCAAGGTG--CGGCCATCTTCCAATTGCTTGCCGGCAA 36250 Query 34574 ATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | || || ||||| ||||| ||||| | || ||||||||| ||||||||| || | || Sbjct 36249 AGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGA-CG 36191 Query 34634 ATAA-AATTGTGTCTT-CGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTT 34691 | ||| | ||| || | ||||| |||| || || || || || || || || || Sbjct 36190 TTGTCAATCGAGTCGGACGGT-TCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTT 36132 Query 34692 CACAAAAATCTGCATGTT 34709 || ||||||||||| || Sbjct 36131 GACGAAAATCTGCATATT 36114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726397134555