Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7 185 8e-42 seq34 167 2e-36 seq41 145 7e-30 seq14 114 1e-20 >seq7 Length=1798773 Score = 185 bits (204), Expect = 8e-42 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || || || ||||||||| | || || || || |||||||| | Sbjct 108483 CCATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACGCTCGACGTGGAACCTT 108542 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 ||||||||||||| | || || ||||| ||||||||||| |||||||| || || || | Sbjct 108543 CCGACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACC 108602 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||||| || | || ||||| || ||||||||| | || | ||| |||| Sbjct 108603 AGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACA 108662 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| ||||||||||| ||| | || ||||| | ||| |||| |||||||| Sbjct 108663 ACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGCAT 108714 Score = 156 bits (172), Expect = 4e-33 Identities = 170/225 (76%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || |||| || ||| | || || || || |||||||| || Sbjct 108712 CATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTC 108771 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||||||| | || || ||||| ||||||||||| |||||||| || || || || Sbjct 108772 CGACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 108831 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | || ||||| || ||||||||| | || | ||| ||||| Sbjct 108832 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 108891 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT--TTTGCGTTTGCGG 27209 ||| ||||||||||| ||| | |||||||| || || || |||| Sbjct 108892 CATCCAAAAGGAGTCCACCCTCCATTTGGTCCTTCGCCTTCGCGG 108936 >seq34 Length=561022 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || | || |||||||||||| Sbjct 36117 ATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCGTCC 36176 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||| | ||||| ||||| || |||||||| |||||||| || || || || Sbjct 36177 GACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGACCAG 36236 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||||| ||||||||||| | ||| | ||| |||||| Sbjct 36237 CAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTACAAC 36296 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| ||||| || || ||||| | || |||| ||||| Sbjct 36297 ATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGG 36343 >seq41 Length=515451 Score = 145 bits (160), Expect = 7e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| ||||| | || ||||| || || || || || Sbjct 382127 ATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCG 382068 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | ||||| ||||| || || ||||| ||||| || || || ||||| Sbjct 382067 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAG 382008 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | || || || ||| |||||||| || ||| | |||||||||| Sbjct 382007 CAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAAC 381948 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || |||||||||||| | |||||||| ||||| Sbjct 381947 ATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 381913 >seq14 Length=1282488 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || |||| || || | || || | || |||||||| | Sbjct 735058 CCATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCAT 734999 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||||||||| || | || || ||||| || || ||||| ||||| || || || || | Sbjct 734998 CCGACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACC 734939 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC 27164 | || || | || | |||||||| |||||||||||| | || |||| || ||| Sbjct 734938 AGCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGAC-GGCCGCACGTTGAGTGACTAC 734880 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||||| || || | || | || |||| ||||| Sbjct 734879 AACATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGG 734830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913860539200