Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq41 181 2e-40 seq7 161 2e-34 seq14 143 6e-29 seq34 134 3e-26 >seq41 Length=515451 Score = 181 bits (200), Expect = 2e-40 Identities = 162/203 (80%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || |||||||| ||||| ||||| | || |||||||| ||| Sbjct 381925 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGC 381984 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| |||||||| || |||||||| | |||||||||||||||||||||| Sbjct 381985 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTT 382044 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||| | ||| ||| ||||| |||||||||||||| || ||||| Sbjct 382045 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTC 382104 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 382105 AGTGTCTTGACAAAGATTTGCAT 382127 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||||||||| |||||||| || || | |||||||||||||||||||| || || Sbjct 383004 GCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 383063 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| | ||| ||| || || ||||| || || ||||| || ||||| ||| Sbjct 383064 ACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 383123 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 383124 TTGACGAAGATTTGCAT 383140 >seq7 Length=1798773 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| ||||||||||| || || || || | || ||| Sbjct 108696 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108637 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || ||||| | || || |||||||| |||| ||||||||||| Sbjct 108636 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108577 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| |||||||| || || | ||| || ||| || ||||| ||||| ||| Sbjct 108576 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108517 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 108516 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| | || || |||||||| ||||||||||| || || || || Sbjct 108933 CGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTG 108874 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| ||||||||| || ||||| | || || |||||||| |||| ||| Sbjct 108873 CGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCT 108814 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || |||||||| |||||||| || || | ||| || ||| || ||||| Sbjct 108813 TCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGC 108754 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| | ||||| || || | ||||| Sbjct 108753 GTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 >seq14 Length=1282488 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || ||||| | || || || ||||||||||| || || | ||| || | || || Sbjct 734845 AGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAA-CGTGCGGCCGTC 734903 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| |||||||| || ||||| |||||||| ||||| || |||| ||||||||||| Sbjct 734904 TTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTC 734963 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 |||||||||||| |||||||| ||||| | ||| || ||| || || | ||||| || Sbjct 734964 CTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGT 735023 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | ||||| Sbjct 735024 TTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq34 Length=561022 Score = 134 bits (148), Expect = 3e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 || || || ||||||||||| || || | ||||| | | |||||||||| |||||||| Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGG-TGCGGCCATCTTCCAATTGCTTGCC 36255 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | ||| || |||||||| || | ||||||||||| ||||||||||| || Sbjct 36254 GGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTT 36195 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||||| || || | ||| || ||| || || | ||||| ||||| || || | ||| Sbjct 36194 GACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGT 36135 Query 211097 CTTTACAAACACCTGCATTTT 211117 ||| || || | |||||| || Sbjct 36134 CTTGACGAAAATCTGCATATT 36114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139598884775