Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7 102 7e-17 seq41 98.7 9e-16 >seq7 Length=1798773 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | |||||||| || ||| ||| ||||| || || || ||| Sbjct 108939 CCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108880 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || | ||| ||||| ||||| || | |||||||||||| | ||| Sbjct 108879 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108820 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || || ||||| || || || || | ||| | | | || ||| | ||||| Sbjct 108819 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCAC 108761 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | |||||| | |||||||||| ||| || || ||||||||||| Sbjct 108760 GTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| ||||| || || || ||| || || || |||| || Sbjct 108694 CACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTC 108635 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| ||||| ||||| || | |||||||||||| | ||| | || || ||||| Sbjct 108634 CAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTG 108575 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || || || || | ||| | | | || ||| | |||||||| | |||||| | | Sbjct 108574 AATCTTTTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCT 108516 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||| ||||| Sbjct 108515 TGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq41 Length=515451 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| ||||||||||| || || ||| || || || || |||||| || || || | Sbjct 381912 GCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACC 381971 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || || || || |||||||| || || || ||||| || | || | | || || Sbjct 381972 GTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTT 382031 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || |||| ||| | | | || || | ||| ||||| | |||| Sbjct 382032 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGA 382090 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | |||| |||||||| || || ||||||||||||||| Sbjct 382091 TCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCATC 382128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541228702355