Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq41 125 5e-24 seq34 107 1e-18 seq14 87.8 1e-12 >seq41 Length=515451 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || || ||||| ||||||||||||||||| ||||| || || Sbjct 382127 ATGCAAATCTTTGTCAAGACACTGACGGGCAAAACGATCACTCTCGACGTTGAGCCCTCG 382068 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || ||||| || ||||| ||||| | || || ||||| Sbjct 382067 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAG 382008 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| || || ||||||||||||| ||||| | ||||||||||| Sbjct 382007 CAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAAC 381948 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || || ||||| || | ||||| || || Sbjct 381947 ATCCAGAAGGAGTCGACCCTGCATTTGGTGTT 381916 >seq34 Length=561022 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | || || || || ||||| | || || || | Sbjct 36114 AATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACCG 36173 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||| | |||| | | || ||||| || ||||| ||||| | ||||| || Sbjct 36174 TCCGACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGAC 36233 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| || || ||||||||||| ||| ||||||| | ||||| || |||| ||| Sbjct 36234 CAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTAC 36293 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| || || || || || || || Sbjct 36294 AACATCCAAAAGGAATCGACGTTGCACTTGGT 36325 >seq14 Length=1282488 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | ||||| ||||| ||||| | || || || | | Sbjct 735056 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 734997 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || ||||| || ||||| ||||| | || || || || Sbjct 734996 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAG 734937 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||||||||| ||| ||||||||| ||||| || | || |||||| Sbjct 734936 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAAC 734877 Query 23791 ATACAAAAAGAGTCCACATTACA 23813 || ||||| || || || || || Sbjct 734876 ATCCAAAAGGAATCGACGTTGCA 734854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006160224180