Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7 156 1e-32 seq14 152 1e-31 seq34 149 1e-30 seq41 127 5e-24 seq229 118 3e-21 seq16 118 3e-21 seq13 100 7e-16 seq6 100 7e-16 >seq7 Length=1798773 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||||| ||||| || ||||||| ||||| ||| | || Sbjct 108933 CGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTG 108874 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | |||||| ||||| ||||| | || || ||||| || ||||| ||| Sbjct 108873 CGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCT 108814 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| |||||||||||||| || || | ||| || | ||||||||| | | Sbjct 108813 TCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGC 108754 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| |||||||| || || | ||| | |||||| Sbjct 108753 GTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || ||||||| ||||| ||| | || | || ||| Sbjct 108696 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108637 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| ||||| | || || ||||| || ||||| |||||||||||| Sbjct 108636 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108577 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||||||||||| || || | ||| || | ||||||||| | |||||| ||| Sbjct 108576 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108517 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 108516 TTGCCGGT 108509 >seq14 Length=1282488 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | || ||||| ||||||| ||||| || ||| || | || ||| Sbjct 734845 AGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCT 734904 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 734905 TCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCC 734964 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||||||||||| ||||| | ||| || | |||||| || |||||||| || Sbjct 734965 TGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTT 735024 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | |||||| Sbjct 735025 TTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq34 Length=561022 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| ||||| ||| ||| || | |||||||| | ||||| || Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 36254 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || || ||||| ||||| || |||||||||||||||||||||||||| Sbjct 36253 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 36194 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || | ||| || | ||||||||| |||||||| ||||| || |||||||| Sbjct 36193 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 36134 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 36133 TTGACGAAAATCTGCATATT 36114 >seq41 Length=515451 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || || |||| ||||||||| || || | || ||||| || ||| Sbjct 381925 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGC 381984 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || || || || ||||||||||| ||||||||| Sbjct 381985 TTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTT 382044 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||| || ||||| | ||| |||| || ||||| | |||||||| ||||||||| Sbjct 382045 TGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCCGTC 382104 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | || || | || | |||||| Sbjct 382105 AGTGTCTTGACAAAGATTTGCAT 382127 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || |||||||| || |||||||| || || || ||||||||||| |||||||| ||||| Sbjct 383004 GCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 383063 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| | ||| |||| || ||||| | || || |||||||| || | || Sbjct 383064 ACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTAATGGTCTTGCCGGTGAGGGTC 383123 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 383124 TTGACGAAGATTTGCAT 383140 >seq229 Length=16518 Score = 118 bits (130), Expect = 3e-21 Identities = 90/104 (87%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| ||| | || ||||| Sbjct 11331 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAA-ACTTTTTTAAAGGCAG 11389 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||| ||||||| |||||||||||||||||||||| || ||| Sbjct 11390 CAGTGAGGAATATTGGACAATGGGCGAAAGCTTGATCCAGCAAT 11433 >seq16 Length=1313120 Score = 118 bits (130), Expect = 3e-21 Identities = 90/104 (87%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 530963 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 530905 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||| ||||||| |||||||||||||||||||||| || ||| Sbjct 530904 CAGTGAGGAATATTGGACAATGGGCGAAAGCTTGATCCAGCAAT 530861 >seq13 Length=1183921 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||| | |||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 725628 AGGTGGCACAGAATTGGGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATCG 725687 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | || |||||||||||||||| Sbjct 725688 TAAGATGACGTATAGGGTCTGACAC 725712 >seq6 Length=1791376 Score = 100 bits (110), Expect = 7e-16 Identities = 98/126 (78%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATA----TTAAATATCGTAGTAAT 371420 || ||||||||||| | |||||||||||| ||||||| ||| |||| || || || Sbjct 788495 AAAGGTAATTTATGAAAAGATAAACCAGGAGATCTCATACATATTATATATAGTTGTTAT 788436 Query 371421 AAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAA 371480 || |||||||| |||| | || || |||||||| | |||||||||||| || ||||| Sbjct 788435 GAAATTTATAGCACCTAATAATGATGAAATACCTGCTAAATGTAAACTAAAAATAGCTAA 788376 Query 371481 ATCGAC 371486 ||| || Sbjct 788375 ATCTAC 788370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192518441779490