Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq41 105 2e-17 seq7 95.1 3e-14 seq34 91.5 3e-13 >seq41 Length=515451 Score = 105 bits (116), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| || || ||||| || ||||||||||||||| | || | || ||||| || | Sbjct 381924 ATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTG 381983 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || ||||| || | ||||| || | | |||||||||||| || || || Sbjct 381984 CTTT--CCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATC 382041 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||||| ||||| | || | ||| || ||| || || ||||| || ||||||||| Sbjct 382042 TTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAACGTCGAGAGTGATCGTTTTGCCC 382101 Query 152079 GTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || |||| ||||| Sbjct 382102 GTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq7 Length=1798773 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || ||||| |||||||||||||| ||| | || | || ||| Sbjct 108924 AGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCT 108865 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| | | ||||||||| | | || |||||||| ||| Sbjct 108864 TCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCT 108805 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||||| || || | || | ||| ||| || || || || || || || Sbjct 108804 TGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTC 108745 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||||||||||| ||||| Sbjct 108744 TTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| ||| | || | || ||||| | Sbjct 108691 CAAG-TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCA 108633 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | | ||||||||| | | || |||||||| ||||||| Sbjct 108632 ACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAA 108573 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||||| || || | || | ||| ||| || || || || || || || |||| Sbjct 108572 TCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTGC 108513 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| || |||| |||||| Sbjct 108512 CGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq34 Length=561022 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| ||| || || | |||||||| | || ||| Sbjct 36313 GTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCG 36254 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | ||||||||| | || ||| |||||||| ||||| || ||||| ||| Sbjct 36253 GCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 36194 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || || || | || || || || || || | |||| Sbjct 36193 ACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTC 36134 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||| || Sbjct 36133 TTGACGAAAATCTGCATATT 36114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153808455920285