Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq34 188 1e-42 seq7 179 8e-40 seq14 170 4e-37 seq256 140 7e-28 seq26 140 7e-28 seq41 136 8e-27 seq10 100 6e-16 seq4 93.3 9e-14 >seq34 Length=561022 Score = 188 bits (208), Expect = 1e-42 Identities = 185/235 (79%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930 |||||| |||||||| || |||| || ||||| ||| ||||||||||||||||| Sbjct 36344 ACCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCT 36285 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| ||||||||||| || | ||| || |||||||||||||| || || |||||| || Sbjct 36284 CAAG-GTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCG 36226 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 | || || |||||||||||||||||| || ||| | || || | ||| || | ||| | Sbjct 36225 GGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCA 36166 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT-TTTCA 283104 | || | ||||| ||||| || ||||||||||| ||||| |||||||| ||||| Sbjct 36165 CGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 36111 >seq7 Length=1798773 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || || |||||||| |||| ||| | ||| || ||||||||||||||||| Sbjct 108941 AACCTCCGCGAAGGCGAAGGACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGC 108882 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||||||||||| || || | || || || |||||||||||||| || |||||| | Sbjct 108881 TGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGG 108822 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||||||||| |||||| || ||| | || || | ||| |||| ||| | Sbjct 108821 GAATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCA 108762 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| ||||| |||||||| ||||| ||||| || ||||| Sbjct 108761 CGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCACGAAGATTTGCAT 108713 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | ||| || ||||||||||||||||| Sbjct 108711 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTG 108652 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| || || | || || || |||||||||||||| || |||||| ||| Sbjct 108651 AGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGA 108592 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| |||||| || ||| | || || | ||| |||| ||| || Sbjct 108591 ATGCCTTCCTTGTCTTGAATCTTTTGCTTCACGTTGTCAATCGAGTCGGAAGGTTCCACG 108532 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 108531 TCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 108485 >seq14 Length=1282488 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || || || || ||||| ||| |||||||||||||||||| Sbjct 734830 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 734889 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||||||| || || | ||| || ||||||||||| | ||||| ||||| ||| Sbjct 734890 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGA 734949 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||||||| || ||| | ||||| | ||| || | ||| || Sbjct 734950 ATCCCTTCCTTGTCCTGGATCTTTTGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACA 735009 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 735010 TCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 735056 >seq256 Length=14964 Score = 140 bits (154), Expect = 7e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 ||||| | |||||||||||||||||| |||||| | ||||| | ||| || ||||||||| Sbjct 4285 TCCTTGGACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTG 4226 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 || || || |||||||| || | || ||||| | |||||||| || | | ||| | | Sbjct 4225 CCGGCGCCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCG 4166 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 ||||| || || ||| | ||||| || || || |||||||| || || |||| ||| || Sbjct 4165 TTGTTGAGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCA 4106 Query 317200 CC 317201 || Sbjct 4105 CC 4104 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| || || || ||||||||||||||||||| |||| ||||| ||| | Sbjct 7855 TTCCTTGTCCTCGCCAGACTGGAAACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAA 7796 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 || || |||||||| ||||| || ||||| |||||||| |||| ||||| ||||| Sbjct 7795 GTGCTCTTCGATGTGATGGAACGCATGCTGCGCCACGTACGCAAAGCGCATGGACGGATG 7736 Query 316281 CTTCCAAACGCTACCGTTAGTAGTTTCCA 316309 |||||| | | ||||| | || | |||| Sbjct 7735 CTTCCACATGGTACCGGTCGTCGGCTCCA 7707 >seq26 Length=682476 Score = 140 bits (154), Expect = 7e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 ||||| | |||||||||||||||||| |||||| | ||||| | ||| || ||||||||| Sbjct 456316 TCCTTGGACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTG 456375 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 || || || |||||||| || | || ||||| | |||||||| || | | ||| | | Sbjct 456376 CCGGCGCCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCG 456435 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 ||||| || || ||| | ||||| || || || |||||||| || || |||| ||| || Sbjct 456436 TTGTTGAGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCA 456495 Query 317200 CC 317201 || Sbjct 456496 CC 456497 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 316161 TTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAG 316220 ||| ||||| || || || ||||||||||||||||||| |||| ||||| ||| | Sbjct 455460 TTCCTTGTCCTCGCCAGACTGGAAACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAA 455519 Query 316221 ATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 316280 || || |||||||| ||||| || ||||| |||||||| |||| ||||| ||||| Sbjct 455520 GTGCTCTTCGATGTGATGGAACGCATGCTGCGCCACGTACGCAAAGCGCATGGACGGATG 455579 Query 316281 CTTCCAAACGCTACCGTTAGTAGTTTCCA 316309 |||||| | | ||||| | || | |||| Sbjct 455580 CTTCCACATGGTACCGGTCGTCGGCTCCA 455608 >seq41 Length=515451 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| | |||| ||| | || || || ||||||||||| || Sbjct 381900 ACCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCT 381959 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || ||||| || || |||||||| | ||||| || ||| || Sbjct 381960 CAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGG 382019 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| ||||||||| || ||| | ||||| | |||||| | || || Sbjct 382020 GATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCAAC 382079 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||||| || ||||||| ||||| || || || ||||| Sbjct 382080 GTCGAGAGTGATCGTTTTGCCCGTCAGTGTCTTGACAAAGATTTGCAT 382127 >seq10 Length=1517454 Score = 100 bits (110), Expect = 6e-16 Identities = 297/453 (66%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 273597 GGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACC 273656 |||| || ||||| || | |||||||| || ||||| || ||| | || |||||| Sbjct 322245 GGGTGGTGGCTCGGCACACTAGTAGACCACCCCGTGCCGATGCCGTCGGCGCCGTTCACC 322304 Query 273657 AGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAA 273716 | | | || | ||| || || |||| ||||||| | | || ||||||| Sbjct 322305 AACAACATGGGCAGAATCGGTACGAAATACACGGGCTCTACGGGTACGCCGTCGTCGTGC 322364 Query 273717 AGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGT 273776 | ||||| ||| | | || |||| | || | | | ||| | || | || Sbjct 322365 ACGTACTCCAAGAGCGTTTCGTCCGCCGCCGGAAAGATCAGCCTCGTGTACGGCTGGAGG 322424 Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 | ||| || || |||| ||||||||| |||||| || || || |||| || |||||| Sbjct 322425 TGCGTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAAC 322484 Query 273837 TGACCCTCGGGCAGTAGCCAGTTT-ATGTTGTTGCTACCGACGTAATCCTGAGCCATATT 273895 ||||| || | ||| ||| | ||||||| |||||| | ||||| ||||| || Sbjct 322485 TGACCAGACGGAACCAGC-AGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTT 322543 Query 273896 CACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 || || || | | || || |||||||||| || || || ||||||||||| || Sbjct 322544 GACAATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTA 322603 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGC-GGAATACA 274014 || | || || || |||| || | ||||| || | ||| || | | ||| Sbjct 322604 CCCGGCCAGTTGGGCGACTTTCATTTCCTTGACCAAGTGCCG-TCGAAAGCATGCAAACA 322662 Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAA 274047 | ||||| ||||| || ||||||| || |||| Sbjct 322663 ATACCTTGCGCTGGGACGGCTTGAGTCCGTCAA 322695 >seq4 Length=1887962 Score = 93.3 bits (102), Expect = 9e-14 Identities = 126/175 (72%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | || || || ||| ||||| |||| || || || ||| || Sbjct 1051504 GCGGCCCCACTTGACTGCATTCACGATCGACCGGAAGTTGTCGTCCATGAGAATGATGTC 1051445 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 | || ||||| || | | || || | ||||||| ||| |||||||||| || | Sbjct 1051444 CGACGCGTCCTTGGCCACCGCCGTGCCGCAGATCCCCATCGCAAACCCGACGTCCGCCTT 1051385 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCCACTCGATGCGACGACGTGGCCA 312656 ||| | ||||||||||||||| | |||||||| || ||| || || || ||| Sbjct 1051384 CTTCAAAGCCGGGGCGTCGTTCGTCCCATCGCCCGTCACTGCCACCACTTGACCA 1051330 Score = 93.3 bits (102), Expect = 9e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 282914 TTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAA 282973 ||||||||||||||| || | ||| ||| |||| || || ||||| || ||||| ||||| Sbjct 1183566 TTGGATGTTGTAGTCGGCCAACGTCCGGTCATCTTCGAGCTGTTTTCCAGCAAAAATCAA 1183625 Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || || ||||| ||| ||||||||||||||||| Sbjct 1183626 GCGCTGCTGGTCTGGCGGTATACCCTCCTTGTCTTG 1183661 Score = 89.7 bits (98), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | || || || ||| ||||| |||| || || || ||| || Sbjct 1133078 GCGGCCCCACTTGACTGCATTCACGATCGACCTGAAGTTGTCGTCCATGAGAATGATGTC 1133019 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 | || ||||| || | | || || | ||||||| ||| |||||||||| || | Sbjct 1133018 CGACGCGTCCTTGGCCACCGCCGTGCCGCAGATCCCCATCGCAAACCCGACGTCCGCCTT 1132959 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| | ||||||||||||||| | |||||||| Sbjct 1132958 CTTCAAAGCCGGGGCGTCGTTCGTCCCATCGCC 1132926 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | | || || ||| ||||| |||| || || || ||| || Sbjct 1047354 GCGGCCCCACTTGACCGCACTCACGATCGACCGGAAGTTGTCGTCCATGAGAATGATGTC 1047295 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 | || ||||| || | | || || | ||||||| ||| |||||||||| || | Sbjct 1047294 CGACGCGTCCTTGGCCACCGCCGTGCCGCAGATCCCCATCGCAAACCCGACGTCCGCCTT 1047235 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| | ||||||||||||||| | |||||||| Sbjct 1047234 CTTCAAAGCCGGGGCGTCGTTCGTCCCATCGCC 1047202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | | || || ||| ||||| |||| || || || ||| || Sbjct 1116105 GCGGCCCCACTTGACCGCACTCACGATCGACCGGAAGTTGTCGTCCATGAGAATGATGTC 1116164 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 | || ||||| || | | || || | ||||||| ||| |||||||||| || | Sbjct 1116165 CGACGCGTCCTTGGCCACCGCCGTGCCGCAGATCCCCATCGCAAACCCGACGTCCGCCTT 1116224 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| | ||||||||||||||| | |||||||| Sbjct 1116225 CTTCAAAGCCGGGGCGTCGTTCGTCCCATCGCC 1116257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 312485 GCGCCCCCACTTGACACCGTTGACAATTGACTCGAAGTCATCGTTCAGGATAACGATATC 312544 ||| ||||||||||| | | || || ||| ||||| |||| || || || ||| || Sbjct 1127880 GCGGCCCCACTTGACCGCACTCACGATCGACCGGAAGTTGTCGTCCATGAGAATGATGTC 1127821 Query 312545 GGCTGCTTCCTTTGCAATGTCTGTACCAC---TCCCCATTGCACACCCGACGTCTGCTTC 312601 | || ||||| || | | || || | ||||||| ||| |||||||||| || | Sbjct 1127820 CGACGCGTCCTTGGCCACCGCCGTGCCGCAGATCCCCATCGCAAACCCGACGTCCGCCTT 1127761 Query 312602 CTTAAGAGCCGGGGCGTCGTTAGCACCATCGCC 312634 ||| | ||||||||||||||| | |||||||| Sbjct 1127760 CTTCAAAGCCGGGGCGTCGTTCGTCCCATCGCC 1127728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728001526090