Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq34 120 3e-22 >seq14 Length=1282488 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || |||| ||| ||||| || ||||| ||||| Sbjct 734827 CCCCCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCA 734886 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | ||||| |||| || | ||||||||||| || || ||||| || ||||||| | Sbjct 734887 CTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGG 734946 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTC 41811 |||| | ||||||||| ||| ||||||||| ||| | | | | |||| | || Sbjct 734947 GGAATCCCTTCCTTGTCCTGGATCTTTTGCTTC-ACGTTGTCGATCGAGTCGGATGGTTC 735005 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| |||| ||| || ||||| ||||||| |||||| ||||| || |||||| Sbjct 735006 CACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCATG 735057 >seq34 Length=561022 Score = 120 bits (132), Expect = 3e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || ||||| || || | ||||| |||| ||| ||||| || ||||| ||||| Sbjct 36347 ACCACCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTC 36288 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 | | |||||| | || || | ||||||||||| || |||| |||||| ||||| | Sbjct 36287 GCTCAAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGG 36228 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 || | || |||||||| ||| |||||||| ||| | | | | |||| || | Sbjct 36227 CGGGATGCCTTCCTTGTCTTGGATCTTTTGCTT-GACGTTGTCAATCGAGTCGGACGGTT 36169 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| |||| ||| || || || || |||| ||||| |||||||||||||| || Sbjct 36168 CCACGTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCATATT 36114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299174702000