Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3296 127 4e-24 seq4078 113 1e-19 seq177 98.7 2e-15 >seq3296 Length=14028 Score = 127 bits (140), Expect = 4e-24 Identities = 432/664 (65%), Gaps = 18/664 (3%) Strand=Plus/Minus Query 319013 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 319072 ||||||||||||| |||||||||| |||| ||| | || || |||||||| ||||| | Sbjct 5118 AACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAAGTGCTCTTCGATGTGATGGAACG 5059 Query 319073 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGG 319132 ||||||| |||||||| |||| ||||| ||||||||||| | ||||| | || | Sbjct 5058 CATGCTGCGCCACGTACGCAAAGCGCATGGACGGATGCTTCCACATGGTACCGGTCGTCG 4999 Query 319133 CTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCA 319192 |||| || ||||| | || ||| || | ||| || || || ||||| || | Sbjct 4998 GCTCCACTTCGCCCGTCAACATCTTGATCATGGTCGACTTGCCGGCGCCGTTGGGCCCGA 4939 Query 319193 CCACACCGATCCTGGAGTTCAGCG-ATACCTGGGCATTCACGTTGTCAAAGATTAGTTTT 319251 ||| | || | || ||||| || || | | | ||||| | | || Sbjct 4938 TCACGGCAATGCGCGACGACAGCGCGCACGTGATC-GTGATGTTGTTGATCGACGGCTTG 4880 Query 319252 TCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTC------ATGATGGCACGGTCC 319305 ||| || || |||| | || | | || | ||| ||||||| | || Sbjct 4879 GTCGTGCCAGGGTACTGGTAC----GAGC-AGTTG-TTCATGCGGATGATGGGCTTGCCC 4826 Query 319306 TTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCG 319365 || |||| | | | ||| || ||||| |||||||| ||| | | | | | | Sbjct 4825 TTGTTCTTGATGTCGGCCAAGAAACCCGGCTCAGGGAACTTGAACGCGAACGTGGCCGCC 4766 Query 319366 GTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCC 319425 ||| |||||| | | ||| || ||| || ||| || | |||| || ||| Sbjct 4765 TCCAGGTTGTAGTACGCCTTGGCTTCCGGGCGCAGCTCCACAAAGTGAGACATGTTGCCC 4706 Query 319426 TTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCG 319485 |||| |||| ||||| |||| ||||| ||||| || |||||| || |||| Sbjct 4705 ACGTACGTCTTGAGCTTGCGGTTCTTCTCGTAGTGGATGATGTTGGTGCACACGTTGTCG 4646 Query 319486 AGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTA- 319544 |||||||| || ||||| ||||||| | ||| ||||| |||| ||||||| Sbjct 4645 AGGAACCCCGAATCGTGCGACACAACGATCGACGTCACGTCGCCGGCGTTGTTCAGGTAG 4586 Query 319545 TTCAATC-AACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603 ||| || | ||| |||||| | ||| | ||||||||||| ||||| || | || Sbjct 4585 TTC--TCGAGCCATGCCACGTTGGCCACGTCCAAGTGGTTGGTCGGTTCGTCCAGCAACA 4528 Query 319604 GTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGG 319663 | | || |||| |||||| || || || | |||| ||||| ||||| || || | Sbjct 4527 AAATGTCGGCCTTCATGAGCATGGCGCGGGCCAATTCGAGCTTCATCTTCCATCCCCCCG 4468 Query 319664 AAAG 319667 | || Sbjct 4467 AGAG 4464 Score = 100 bits (110), Expect = 6e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 319855 GAGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCC 319914 || ||||||||||| | |||||||||| | || |||||||| || || || || || || Sbjct 4279 GACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTGCCGGCG 4220 Query 319915 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTC 319974 ||||| || ||||||| ||||| |||| || || || | | |||| |||||| Sbjct 4219 CCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCGTTGTTG 4160 Query 319975 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACT 320034 || || || | ||||| || || || || || || || || |||| || ||||| || Sbjct 4159 AGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCACCCACG 4100 Query 320035 TCT 320037 ||| Sbjct 4099 TCT 4097 >seq4078 Length=2209 Score = 113 bits (124), Expect = 1e-19 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 1424 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 1365 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1364 CCCACGGTGGGC 1353 >seq177 Length=11201 Score = 98.7 bits (108), Expect = 2e-15 Identities = 199/287 (69%), Gaps = 10/287 (3%) Strand=Plus/Plus Query 281741 CGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTG 281800 ||| |||||||||| |||||||| ||| || || ||||| |||| || |||||||| Sbjct 978 CGTAAAGATATACCGGGCACTCGCCGCGTCCTTCCCGCCCTGGAGCCGCGTGCCAAACTG 1037 Query 281801 ACCCTCCGGCAACAACCAGT-TAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGA 281859 ||| ||| ||| | |||| | ||| ||| |||||| | ||||| |||| ||||| Sbjct 1038 ACCAGACGG-AACCAGCAGTGGCACGTTGTTGGAGCCGACGAAGTCCTGCGCCATGTTGA 1096 Query 281860 CGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAAC 281919 | || || | | ||||| |||| ||||| || || || |||||||||| || | Sbjct 1097 CAATCGTGCTCAATAGCGACGCCTCGCCGTGATGGTACGCCGTGTGTTCGGCGCAGTACC 1156 Query 281920 CACTGAACTGTGCTACCTTCACGTC--TGATGTCAAGTTGCGTTTGAAAGC--GCAATAT 281975 | | || || || |||| || ||| |||| ||| | |||||| |||| | Sbjct 1157 CGGCCAGTTGGGCGACTTTCATTTCCTTGA--CCAAG-TGCCGTCGAAAGCATGCAA-AC 1212 Query 281976 AATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAAT 282022 ||||| || || || || ||||||| || |||| || |||||| Sbjct 1213 AATACCTTGCGCTGGGACGGCTTGAGTCCGTCAATCACGTTCGGAAT 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057739684485230