Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3609 86.0 5e-12 >seq3609 Length=34764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || ||||| ||||| ||| ||| || ||| | Sbjct 21582 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21523 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | |||||||| || || || ||||| | || ||||| Sbjct 21522 GACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAG 21463 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || ||||||||||| || ||||||||||| || || ||||||||| Sbjct 21462 CAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAAC 21403 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || || || || ||||||| || Sbjct 21402 ATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCG 21368 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || ||||| ||||| ||| ||| || ||| | Sbjct 21810 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21751 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||||| || || || || ||||| | ||| || ||| Sbjct 21750 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAA 21691 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||||||||| || ||||||||||| || || ||| ||||| Sbjct 21690 CAGCGCCTTATCTTTGCGGGGAAGCAACTGGAAGACGGTCGTACCCTGAGCGACTACAAC 21631 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || |||||||| ||||| || || ||||| | || | || || ||| Sbjct 21630 ATCCAGAAGGAGTCTACCCTGCATTTGGTGCTTCGCCTGCGTGGTGGG 21583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428303524233755