Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1997 361 6e-95 seq3609 165 8e-36 seq5958 145 8e-30 seq2657 132 5e-26 seq916 116 4e-21 >seq1997 Length=17169 Score = 361 bits (400), Expect = 6e-95 Identities = 461/626 (74%), Gaps = 8/626 (1%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || |||||||||| |||||||||| | ||||| || || | ||||| Sbjct 6427 GAGCCGTTCCTTGTCGAGAACCCCAACCGGTTCGTGTTGTTCCCGATCCAGCATGCGGAC 6368 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||| |||||||| || ||||||||| |||||||| | |||||| | ||| || Sbjct 6367 GTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGCCGAGGAACTCGACTTG 6308 Query 116696 -TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 | || | || | |||||||| ||| |||||||||||| ||||||| ||| Sbjct 6307 GTGCACGATCA-GCGCGACTGGATCAAGTTGTCGGACAACGAGCGCTTCTTCATCACGCA 6249 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTC--GAGCGT 116812 ||||||||| || || || || |||||||||||||||||||| || |||| | || | | Sbjct 6248 CGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAAAACCTGGCCATGAAC-T 6190 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || | || ||||| || |||||||||| ||||| || || || || |||||||| Sbjct 6189 TTAGCA-ATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCGCCATC 6131 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 || ||| | ||||||||| |||| ||| |||||||||||| ||| | || Sbjct 6130 GAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACCCGACC 6071 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 |||||| ||| || || ||||||||| || || |||||||||| |||||| | Sbjct 6070 GAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCGTCATGCGCAAGGCCAAC 6011 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 |||||||| ||| || | || || | ||||| | || ||||||| | || || || Sbjct 6010 TGGGCGCTCAAGTGGTGCGACAACA-AGCGCGCCGCGTACGCCGAGCGCATCGTCGCGTT 5952 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 ||| ||||| || ||| ||||||| || || ||| | |||| |||||||||||||| Sbjct 5951 CGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATCTTTTGGCTCAAGAA 5892 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 ||||| |||||||| |||||| | ||| ||||| |||||||| | ||||| || || Sbjct 5891 GCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCGCGCGACGAAGGCCT 5832 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGT 117197 ||| ||||||||||| || ||| ||| Sbjct 5831 GCACTGCGACTTTGCATGCTTGATGT 5806 >seq3609 Length=34764 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||| ||| |||||||||| || | Sbjct 21582 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21523 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| || || ||||| | || || Sbjct 21522 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 21464 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||||| || || ||||| |||| |||||||| | ||| ||||| Sbjct 21463 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 21404 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||| | ||||||||| | | ||||| Sbjct 21403 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGG 21356 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||| ||| |||||||||| || | Sbjct 21810 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTCG 21751 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| | || || | ||||| || ||||||||| ||||||| Sbjct 21750 GACTCGATCGACAACG-TCAAGCAGAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 21692 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||||| || || ||||| |||| || ||||| | ||||||||| Sbjct 21691 ACAGCGCCTTATCTTTGCGGGGAAGCAACTGGAAGACGGTCGTACCCTGAGCGACTACAA 21632 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || |||||| | ||| | ||| || | || || Sbjct 21631 CATCCAGAAGGAGTCTACCCTGCATTTGGTGCTTCGCCTGCGTGGTGG 21584 >seq5958 Length=27980 Score = 145 bits (160), Expect = 8e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | ||||| || |||||||| ||||||| ||| | || Sbjct 18498 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 18557 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || |||| | ||| |||| |||| ||||| || ||||| ||| | ||||| Sbjct 18558 GACTCGATTGACAACG-TGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCA 18616 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||| |||| |||| ||||| |||| ||||||||| Sbjct 18617 GCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAA 18676 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| |||| || || Sbjct 18677 CATCCAAAAGGAGTCCACCCTCCA 18700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40794 CATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCAC 40853 ||| ||| | |||||||| || | |||| || ||||| ||| |||| |||| ||||| Sbjct 18701 CATTCCCCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCAC 18760 Query 40854 CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||||||||| |||||| |||| || || Sbjct 18761 GCTCAGCGACTACAACATCCAAAAGGAGTCCACCCTCCA 18799 >seq2657 Length=89683 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||| | ||||| ||||||||||| | || || ||| | || Sbjct 86347 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 86288 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| |||| || | ||||| || || || ||| ||||||| Sbjct 86287 GACTCGATCGACAACG-TGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCA 86229 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || ||||| || |||| |||| ||||| | | |||||||| Sbjct 86228 GCAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAA 86169 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||| ||||| | ||| |||| || ||| | ||| || | || || ||| Sbjct 86168 CATCCAAAAGGAATCGACGTTGCACCTCGTGCTCCGCCTGCGTGGTGGGGGC 86117 >seq916 Length=99455 Score = 116 bits (128), Expect = 4e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || || || |||||||| | ||||| ||| Sbjct 61071 GAAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAAC 61012 Query 40745 CCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | ||||| | || |||| ||||| |||| || | ||||| || |||||||| | Sbjct 61011 CGTCCGACTCGATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCT 60953 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || | |||| || ||||| || |||| || | |||||| | | |||| Sbjct 60952 GACCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGAC 60893 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||| ||||| | ||| |||| | ||| | ||| || | || || || Sbjct 60892 TACAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGTGG 60837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515179135266960