Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2657 114 1e-20 seq3609 113 5e-20 seq5958 107 2e-18 seq916 96.9 4e-15 seq3082 93.3 5e-14 seq2479 89.7 6e-13 seq1671 89.7 6e-13 seq4323 87.8 2e-12 seq4233 87.8 2e-12 seq3971 87.8 2e-12 seq3646 87.8 2e-12 seq3645 87.8 2e-12 seq6022 82.4 9e-11 >seq2657 Length=89683 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| ||| || || || |||| || | ||||| || || || Sbjct 86157 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 86216 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||| | || | | ||||||||| ||| ||||| || | ||| Sbjct 86217 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTT 86275 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || |||| | ||||||||| | |||||||||||| ||||| | |||||| || Sbjct 86276 GTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGAC 86335 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 86336 GAAGATTTGCAT 86347 >seq3609 Length=34764 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||||||||| || |||||| || || |||||||| ||| || || || Sbjct 21368 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 21427 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || ||||| || || || ||||| || ||||| || | || | | |||||| Sbjct 21428 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 21487 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| ||||| |||| ||| | | | || ||| | || || |||| || || Sbjct 21488 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTAT 21546 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| || ||||||||||| Sbjct 21547 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||||| || |||||| || || ||||| || ||| || || |||| || Sbjct 21601 CACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTC 21660 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || || || || || ||||| ||||| | || | || ||||||||| Sbjct 21661 CAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTG 21720 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || |||| ||| | | | || ||| | || || |||| || ||||| | Sbjct 21721 GATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCT 21779 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||||||||| Sbjct 21780 TGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq5958 Length=27980 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || || || || |||| || | |||||| ||||| || Sbjct 18689 CTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 18630 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || |||||||| || ||||| || | ||| Sbjct 18629 GATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 18571 Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || || |||| | |||||| |||| ||||||||| || ||||| | |||||| | Sbjct 18570 TGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCA 18511 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 18510 CGAAGATTTGCAT 18498 >seq916 Length=99455 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 60857 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 60916 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 | ||||| || || || || | ||||||||||| | ||| | || |||||||| Sbjct 60917 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 60976 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| ||||| |||| ||| | | | || |||| || |||||| || | ||||||||| | Sbjct 60977 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 61035 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || || | ||||| || || || ||||| ||| Sbjct 61036 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 61070 >seq3082 Length=42813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | | Sbjct 20260 ATGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTA 20201 Query 60114 TACTCACCACTATACTACCGAGGATTGAATA-TATAACTTGAATATTA-CAAT 60164 |||| |||||||||||| ||||||| ||| ||||| |||| | || |||| Sbjct 20200 TACTGACCACTATACTAACGAGGATCATATACGATAACATGAAAAGTAGCAAT 20148 >seq2479 Length=81179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | || Sbjct 61305 TGAAAAAACATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTAT 61246 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 61245 ACTGACCACTATACTAACGAGGAT 61222 >seq1671 Length=8280 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||||| |||||| |||| |||||||||||||| | || Sbjct 2994 TGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTAT 2935 Query 60115 ACTCACCACTATACTACCGAGGAT 60138 ||| |||||||||||| ||||||| Sbjct 2934 ACTGACCACTATACTAACGAGGAT 2911 >seq4323 Length=23553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 19814 GAAAAACAATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 19755 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 19754 CTGACCACTATACTAACGAGGAT 19732 >seq4233 Length=31351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 21274 GAAAAAGAATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 21215 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 21214 CTGACCACTATACTAACGAGGAT 21192 >seq3971 Length=13679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 11783 GAAAAAGAATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 11724 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 11723 CTGACCACTATACTAACGAGGAT 11701 >seq3646 Length=2133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 56 GAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 115 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 116 CTGACCACTATACTAACGAGGAT 138 >seq3645 Length=11237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | |||||| |||||| |||| |||||||||||||| | ||| Sbjct 5761 GAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATA 5702 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 5701 CTGACCACTATACTAACGAGGAT 5679 >seq6022 Length=6263 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| |||| |||||||||||||| | ||||| |||||| Sbjct 2649 TCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTATACTGACCACT 2708 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2709 ATACTAACGAGGA 2721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571773134033880