Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3609 113 4e-20 seq5958 105 5e-18 seq916 93.3 3e-14 >seq3609 Length=34764 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || ||||| ||||| || ||||||||| |||||||| ||| |||| |||| |||| Sbjct 21371 AACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCT 21430 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||||||| ||||| || || || | || || || || ||||| | || ||||||||| Sbjct 21431 TCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCC 21490 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || |||||||| || | | |||| ||| || || | ||| || ||| Sbjct 21491 TGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTC 21550 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||| || ||||||||||| Sbjct 21551 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||| |||||||||||| |||| ||| |||| ||| Sbjct 21602 ACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCC 21661 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || || | ||||||||||| || || | || ||||||||| Sbjct 21662 AGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGG 21721 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||||| || | | |||| ||| || || | ||| || |||||| Sbjct 21722 ATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTG 21781 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||||||||| Sbjct 21782 CCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq5958 Length=27980 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| || |||||||||||| | || ||| |||| |||| || Sbjct 18701 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTG 18642 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||| ||||| ||||| || || | || |||||||| ||| || Sbjct 18641 CTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTT 18582 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 |||||| | || | || | ||| | ||||| || | || || ||||| |||| Sbjct 18581 TTGCTTCA-CGTTGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCG 18523 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 ||| |||||||| |||||||||||| ||| Sbjct 18522 TCAACGTCTTCACGAAGATTTGCATGGTGC 18493 >seq916 Length=99455 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| ||| ||||| || |||||||||||| ||| ||| | || ||| Sbjct 60858 ACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTCC 60917 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| || ||||| || ||||| ||||| ||||| || || | || |||||||| Sbjct 60918 AATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGG 60977 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || |||||||| | || | || | ||| ||||| |||| || || ||||| Sbjct 60978 ATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTT 61036 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || |||| |||||| || || || ||||| || Sbjct 61037 CCCAGTCAAAGTCTTGACGAAAATCTGCATATT 61069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395045246015641