Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1997 141 1e-28 >seq1997 Length=17169 Score = 141 bits (156), Expect = 1e-28 Identities = 297/440 (68%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||||||| ||||| || ||||||||||| || ||||| | || | |||||| || | Sbjct 5806 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 5865 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 ||| || || ||||| || || ||||| || |||||||| ||||| ||| || |||| Sbjct 5866 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGG 5925 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--- 33750 | |||||||| ||||| || || || || || | | | ||| | || |||||| Sbjct 5926 AGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGCT 5985 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| | |||||| | ||||| | |||||| | || || || || ||||| | Sbjct 5986 TGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCGA 6045 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | | || || || | || || | || || ||||| | || Sbjct 6046 TGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGCG 6105 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 |||| |||||| || |||||||| ||||| || || || || || || |||| |||| Sbjct 6106 AGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCCT 6165 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTC--TGCTAAATTTTCATTCACTATTCCATC 33988 ||| | |||||||| | | ||| |||| || | ||||| || || || || || Sbjct 6166 CGGGGACTTGCACTTCATTGCTAAA--GTTCATGGCCAGGTTTTCGTTGACGATGCCGTC 6223 Query 33989 ACTGGCTGCAAAAAACGCCA 34008 || || ||||| ||||||| Sbjct 6224 GCTCGCAGCAAAGAACGCCA 6243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629768623808880