Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3609 131 2e-25 seq2971 87.8 2e-12 >seq3609 Length=34764 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||||| || || || | || ||||| || || ||||| ||||||||| Sbjct 21356 CCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTC 21415 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| || || || || ||| |||| || ||||||||||| ||||| Sbjct 21416 AGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGG 21475 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||||| || | | || | | ||| | |||||| || Sbjct 21476 ATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACG 21535 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 21536 TCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| || ||||||| || | |||||| || || || || Sbjct 21614 GTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTCCAGTTGCTTCCCC 21673 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || || || || || || |||||||| ||||| ||| || || || Sbjct 21674 GCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTG 21733 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | | ||| | |||||| || || | ||| | ||||||||||| | || Sbjct 21734 ACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTGAGGGTC 21793 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 21794 TTGACGAAGATTTGCAT 21810 >seq2971 Length=8032 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/332 (66%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 154059 ATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCG--CCTTTACGCTTGCC---GC 154113 |||||| |||||| || |||| ||| | || || || || || ||||| || || Sbjct 3202 ATGTCGGCATGCCAAGGCTCCAAGTACATGGC--GAACGACCCCTTGCGCTTTCCCCCGC 3145 Query 154114 CCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATGGGTAGCAGACCGCTGG 154173 |||| | |||| || | | | |||||| |||||||||||||| | | ||| ||| Sbjct 3144 CCTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGTTGG 3085 Query 154174 CGGTACCGTTTGTAGATTTAATCTTGCTGTTGCGGCCTCGAACGCTGTTTACGTTTAATC 154233 || ||||| || ||| | ||||||| | | || | | ||| | ||| | | Sbjct 3084 AGGACCCGTTGGTCCCGCGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTCACGC 3025 Query 154234 CAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTTCAATGTGTTATAGATACCAC 154293 |||| ||||| | ||||| || || || | |||||||||| |||||||| Sbjct 3024 CAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATACCTT 2965 Query 154294 GAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACTCATCTGCGGAGTTGGAGTGC 154353 ||| |||| | ||||| ||| ||||| || || || || ||| || |||| Sbjct 2964 CGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGCGTGC 2905 Query 154354 CGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385 |||| |||| ||||||| | ||||| ||| Sbjct 2904 CGGCGTTGAACAAGGTCGGGGTCGCGTGGGTG 2873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496025424823200