Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1997 154 2e-32 >seq1997 Length=17169 Score = 154 bits (170), Expect = 2e-32 Identities = 302/441 (68%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||||||| ||||| || ||||||||||| || ||||| | || |||||||| || | Sbjct 5806 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 5865 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 ||| || || ||||| || || ||||| || |||||||| ||||| ||| || || || Sbjct 5866 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGA-GCAGAACGAACCG 5924 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-- 50128 || |||||||| ||||| || ||||| || || || | | ||| | || ||||| Sbjct 5925 GAGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGC 5984 Query 50129 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 ||| | |||||| | ||||| | |||||| | || || || || ||||| Sbjct 5985 TTGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCG 6044 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| | | || || || | || || | || || ||||| | || Sbjct 6045 ATGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGC 6104 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||| |||||| || |||||||| ||||| || || || || || || |||| ||| Sbjct 6105 GAGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCC 6164 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGT 50365 |||| | |||||||| | | ||| ||||| || | ||||| || || || |||| Sbjct 6165 TCGGGGACTTGCACTTCATTGCTAAA--GTTCATGGCCAGGTTTTCGTTGACGATGCCGT 6222 Query 50366 CACTGGCTGCAAAAAACGCCA 50386 | || || ||||| ||||||| Sbjct 6223 CGCTCGCAGCAAAGAACGCCA 6243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718212945622440