Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1997 136 5e-27 >seq1997 Length=17169 Score = 136 bits (150), Expect = 5e-27 Identities = 298/441 (68%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||||||| ||||| || ||||||||||| || || || | || | |||||| || | Sbjct 5806 ACATCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGA 5865 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 ||| || || ||||| || || ||||| || |||||||| || || ||| || || || Sbjct 5866 ACGACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGA-GCAGAACGAACCG 5924 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-- 42233 || |||||||| ||||| || || || || || | | | ||| | || |||| | Sbjct 5925 GAGAAGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCGC 5984 Query 42234 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 ||| | |||||| | ||||| | |||||| | || || || || ||||| Sbjct 5985 TTGTTGTCGCACCACTTGAGCGCCCAGTTGGCCTTGCGCATGACGCACGGAATGGTTTCG 6044 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| | | || || || | || || | ||||| ||||| | || Sbjct 6045 ATGGCGCGCAGCACGCGGTCCTTCTCGGTCGGGTCCTTGATGTATGTGTCGATGAGGAGC 6104 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||| ||| || || |||||||| ||||| || || || || || || |||| ||| Sbjct 6105 GAGTACACTTCCGAGTGGATGTTTTCGATGGCGATTTGGAACCCATAAAAGCATCGCGCC 6164 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 |||| || || ||||| | | ||| ||||| || | |||||||| || || |||| Sbjct 6165 TCGGGGACTTGCACTTCATTGCTAAA--GTTCATGGCCAGGTTTTCGTTGACGATGCCGT 6222 Query 42471 CACTGGCTGCAAAAAACGCCA 42491 | || || ||||| ||||||| Sbjct 6223 CGCTCGCAGCAAAGAACGCCA 6243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671087010537960