Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1997 161 1e-34 seq2971 100 4e-16 seq4946 93.3 6e-14 >seq1997 Length=17169 Score = 161 bits (178), Expect = 1e-34 Identities = 573/878 (65%), Gaps = 58/878 (7%) Strand=Plus/Minus Query 125016 GACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGAT 125075 ||| | |||||||||||||| || || |||| ||| ||||| | ||| || |||| Sbjct 6370 GACGTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGCCGAGGAACTCGAC 6311 Query 125076 CTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATA 125135 || | || | | ||| ||| | ||| | || | ||||| || || Sbjct 6310 TTGGTGCACGATCAGCGCGACTGGATCAAG---TTGTCGGACAACGAGCGCTTCTTCATC 6254 Query 125136 TCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACA 125195 ||||| | |||| |||||||| | ||| || ||||||||||| || ||| | || Sbjct 6253 ACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAAAACCTG--GCCA 6196 Query 125196 CGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCA 125253 || | | ||| || || | || |||| | |||||||| || ||||||||| Sbjct 6195 TGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGGTTCCAAATCG 6136 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 || || ||| | ||||||||| ||||||| || || |||| ||||| || | Sbjct 6135 CCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATACATCAAGGACC 6076 Query 125314 CGCAACGTAAA----CACATGCTCTTTAACGCAATCGACACGGTGCCGTCT---ATACGT 125366 || | || || | | |||| ||| ||||| || | |||| || || Sbjct 6075 CG-ACCGAGAAGGACCGCGTGCTGCG---CGCCATCGAAACCATTCCGTGCGTCATGCGC 6020 Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT---CTTCGTACGCCGAC 125423 || ||| | |||| | | |||| ||| | ||||| | |||||||||| Sbjct 6019 AA---GGCCAACTGGGCGCTCAAGTGGTGCGA---CAACAAGCGCGCCGCGTACGCCGAG 5966 Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA-GTTTTGCGGCCAT 125482 | | || || ||||||||||| || ||||||||||| || ||| ||| ||| |||| Sbjct 5965 CGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCT-CCAT 5907 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||||||||||||||||||||| |||||||| || ||| || | ||||| | || || Sbjct 5906 CTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTC 5847 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTC-TACTGT-TTCGCAACTATCTGCGT 125600 || ||||| ||||| ||||| ||||||| ||| | | ||| ||| | || ||| Sbjct 5846 GCGCGACGAAGGCCTGCACTGCGACTTTG-CATGCTTGATGTACTCGAAGCT-----CGT 5793 Query 125601 CCCGAGTGCAGATCCAGCGAT--GAAAAGGTCATCAAC---ATTGTAACCGATGCCGTGA 125655 | | | ||| | || | | |||| || ||||| ||||||||| Sbjct 5792 C----------AACAAGCTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTG 5743 Query 125656 GGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCA 125715 ||| || | ||||| | | ||| | | || || | ||||||||||||| Sbjct 5742 AGATCGAGAAGCAGTTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGG 5683 Query 125716 AGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG-- 125773 ||| |||||||| ||||| ||||| || ||||| || || ||| | | |||| Sbjct 5682 CGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCT---CGAATCGCTTGGCG 5626 Query 125774 -CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 || |||| | | |||||||| |||||||| | ||| || || ||| | | | Sbjct 5625 CCCCCAAGCTCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAG 5566 Query 125833 GTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||||||||||||||||| || |||||||| Sbjct 5565 GCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTAC 5528 >seq2971 Length=8032 Score = 100 bits (110), Expect = 4e-16 Identities = 272/406 (67%), Gaps = 14/406 (3%) Strand=Plus/Plus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | |||||||| || || | ||| | || ||| ||||||||||||||||| | Sbjct 3310 CGTGCCCGCGACTTGTTCTACGCCATGTGGATTCCGGATCTGTTCATGAAGCGCGTCGA- 3368 Query 97044 GACG-GTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | || ||| |||||||| | | || ||| | | || || ||| ||| ||||| Sbjct 3369 GTCGAACGGCGACTGGAGCTTGTTCTGTCCCAATGAAGCGCCGGGGCTGCACGAATGCTG 3428 Query 97103 GGGCGAAGAGTTTGAGGCCAAGT---ACACGGCCTACGAGCAAGAGGGCCGATACGTG-- 97157 ||||| ||||| ||||| || ||| | |||||| || ||||| | || | Sbjct 3429 GGGCGCCGAGTTCGAGGCGCTGTTCCACAAG---TACGAGTCGGAAGGCCG-TGCGCGCA 3484 Query 97158 AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 |||||| || | || | | ||||| |||||| || | | || || || || || Sbjct 3485 AGACGA-TCAAGGCGCAGCAGTTGTGGTTCGCCATCTTGGAGTCGCAAGTCGAAACCGGC 3543 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGG 97276 || |||||||| || ||||||||| |||| || |||| |||||| | || |||| Sbjct 3544 ACGCCGTACATGCTGTACAAGGAT-GCGTGCAACGGCAAGTCCAACCAGCAGAACCTGGG 3602 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336 ||| |||||| ||||| ||||| || || | |||||| | |||||| Sbjct 3603 CACGATCAAGTCGTCCAACTTGTGCTGCGAGATCATCGAGTACACGAGCAAGGACGAAGT 3662 Query 97337 GGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAG 97382 ||| || ||| |||| || || ||| | |||||||| ||| Sbjct 3663 GGCCGTGTGCAACTTGGCGTCCATCGCGCTGTCAAAGTTTGTCGAG 3708 >seq4946 Length=29365 Score = 93.3 bits (102), Expect = 6e-14 Identities = 506/798 (63%), Gaps = 56/798 (7%) Strand=Plus/Minus Query 127012 ATTGCGGTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAAC 127071 |||||| ||||||| || || || ||| | ||| || || ||||| || || || ||| Sbjct 1820 ATTGCG-TGGCGATGGCGGCGATTTGGTGCTCGTGGGGGCCGCCTTGGAGACCGGGGAAC 1762 Query 127072 ACGGCTCGTTCAATTTCCTGCTCTA-GTGAT--------TTGCGGTAAAAGATGACTCCG 127122 |||||| | | || | || | || | |||||||||||||| | ||| Sbjct 1761 ACGGCTTGGTTGATCTTGACTTCAAAGTTACGCGCGTCCTTGCGGTAAAAGATCATGCCG 1702 Query 127123 GCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAG 127182 || || || || | ||| | |||||| || || || || || ||||| || |||| || Sbjct 1701 GCACGGGGGCCGCGGAGGGACTTGTGGGTAGTGGTCGTGACGATGTCGCAGAACTCGAAC 1642 Query 127183 GGGCCAGGAATGA-CTTTGCCCGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCAG 127241 ||| | | || | ||| || | |||||| | ||| || || ||| ||| || Sbjct 1641 GGGTC-GTTGTGCTCCTTGGTGGCCACCAAGCCAGAGTAGTGGGCCATGTCGCACATGAG 1583 Query 127242 CAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA-TAGTCCAAGCGCCGAGGAT 127300 ||| |||||| | || || |||| ||||| || | |||||| || || || | Sbjct 1582 CAACGAGCCGTTGTCGTCAGCGATCTTGCGGAA-CGCAGAGTAGTCCCAGTCACGGGGGT 1524 Query 127301 AGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTT 127360 | || ||| | ||| || || ||||| || |||| ||||| | | Sbjct 1523 ACGCGCTACCACCGCACACGATGAGAGCGGGCTTGAAGAGGCTGGCGGATTCGGCCAACT 1464 Query 127361 TGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGA 127420 | | |||| | || || || | || | ||| |||||||| ||||||||| | | Sbjct 1463 TATCGAAGTCAATCAGACCGGTTTCGGGGTGCACGCGGTACGGCAAGCTTTCGAAGTACA 1404 Query 127421 GTGATGTAGCGGACACG---TTGCGG---------------------------AATCCGT 127450 || || || |||||| |||||| || |||| Sbjct 1403 CGGACGTGGCAGACACGGCCTTGCGGGTGTTCTCGGCCTTGCTGTACGTGTAGAAACCGT 1344 Query 127451 GCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT-AACG 127509 | |||| ||||||||| ||||| || | |||||||| | | || || ||| Sbjct 1343 GGGTCAAGTGGCCTCCACTGGGCAAGTCCAAGCCCATGATGCGGTCATGAGGACGCAACA 1284 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 || || |||||||||||||||||||| ||||| |||||||| || || ||| ||| Sbjct 1283 ATGCC-GTGTACACGGCAAAGTTGGCGGGGGAGCCAGAGTACGGCTGGACGTTCACGCCC 1225 Query 127570 CATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTG-CTGTGC-TAGCAGTTCGA 127627 ||||||| |||||| | ||||| || | | ||| | || || ||| | |||| Sbjct 1224 CATTCGGCAGGGTTCAACCCGTACGCT-TG-CAAAGCGCGGTCTTGGCAGAGCTGCTCGA 1167 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTATCGCT--TTCCGGGCCTA-CCCTCCGAGT 127684 | | ||||| | ||||| || || ||||| || | ||| | || || || | || Sbjct 1166 TTTGGTCGATCACTTCGTTCCCGCCGTAGTAGCGTTGGTTC---ACGTAGCCTTCGGCGT 1110 Query 127685 ACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCG 127744 |||||||| | | ||||| | || ||| || || | | | || |||||||| | Sbjct 1109 ACTTGTTGGTCAAGCACGAGCCCAAGCAGTCCATGACGGCGCGGGACGTGAAGTTTTCAG 1050 Query 127745 ATGCGATCAACTCTAAGC 127762 | ||||| | || |||| Sbjct 1049 ACGCGATGAGTTCCAAGC 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741001573383960