Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2657 98.7 6e-16 seq916 98.7 6e-16 seq3609 96.9 2e-15 >seq2657 Length=89683 Score = 98.7 bits (108), Expect = 6e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 33167 TGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGC 33226 ||||| ||||| || ||||| || ||||| ||| ||| || | ||| ||||||||| Sbjct 86145 TGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGC 86204 Query 33227 TTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCC 33286 || || ||| || | ||||||||||||| ||| || ||||| || || ||| Sbjct 86205 TTGCCGGCAAAGATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTT 86264 Query 33287 TGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTA 33346 || || || | | |||| |||| |||| || |||| || || ||||| ||||| Sbjct 86265 TGCTTCACGTTGTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTC 86324 Query 33347 AGAGTTTTTACGAAAATTTGCATG 33370 | || || ||||| ||||||||| Sbjct 86325 AACGTCTTGACGAAGATTTGCATG 86348 >seq916 Length=99455 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| ||||| ||||| || ||||| || ||||| || ||| || | || || Sbjct 60857 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 60916 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||||||||| || ||| || || || |||||||| | || |||||||| || || Sbjct 60917 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 60976 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| || || || | | ||||| |||| |||| ||||||| || || || || Sbjct 60977 GATCTTTTGCTTGACGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCTT 61036 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || | ||| || |||||||| ||||| ||| Sbjct 61037 CCCAGTCAAAGTCTTGACGAAAATCTGCATATTT 61070 >seq3609 Length=34764 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | |||||||||||||||| |||||||| || || || |||||||| Sbjct 21355 ACCGCCACGGAGGCGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCT 21414 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || | ||| |||| ||||||||| ||| || | |||||||| || | || Sbjct 21415 CAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGG 21474 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || ||| || || || | | |||| ||| ||| | || Sbjct 21475 GATTCCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGAC 21534 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || || || || || || ||||| |||||||| Sbjct 21535 GTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||||||||||| || ||||| || || || ||||| || || | | ||| || Sbjct 21601 CACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTC 21660 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || |||||| || ||| || | || || ||||||| ||| |||||||| || || Sbjct 21661 CAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTG 21720 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | | |||| ||| ||| | ||||| || ||||| || || Sbjct 21721 GATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTT 21780 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| |||||||| Sbjct 21781 GCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318753430780458