Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2661 192 9e-45 seq5933 190 3e-44 seq2659 179 6e-41 seq2115 172 9e-39 >seq2661 Length=46226 Score = 192 bits (212), Expect = 9e-45 Identities = 206/270 (76%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||| ||||||||||| || || Sbjct 29154 GCCAAGCGCCATCGCAAGGTC-CTTCGCGACAACATCCAAGGTATCACCAAGCCTGCCAT 29212 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||||||||| || ||||||||| ||||||| ||| |||| ||||| | Sbjct 29213 CCGCCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGTTTGATCTACGAAGAAAC 29272 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| |||| | || ||| || || Sbjct 29273 CCGCGGTGTGCTCAAGGTGTTCTTGGAAAACGTCATCCGTGATTCCGTCACCTACACTGA 29332 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| |||| || || ||||| || ||||| Sbjct 29333 ACACGCTCGCCGAAAGACCGTCACGGCCATGGACGTCGTGTACGCTTTGAAGCGCCAAGG 29392 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 ||| | | || ||||| ||| ||||||| Sbjct 29393 CCGCACCTTGTACGGTTTCGGAGGTTAATC 29422 >seq5933 Length=19599 Score = 190 bits (210), Expect = 3e-44 Identities = 205/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || ||||| |||||||||||||| ||||||||||| |||| Sbjct 12397 CGCCAAGCGCCATCGCAAGGTC-CTTCGCGATAACATCCAAGGGATCACCAAGCCCGCTA 12339 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||||||||| || ||||||||| ||||||| ||| |||| ||||| | Sbjct 12338 TCCGTCGTCTGGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGCTTGATCTACGAAGAAA 12279 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | ||| | | | ||| |||| ||| | || ||| || | Sbjct 12278 CCCGCGGTGTGCTTAAGGTGTTCTTGGAAAACGTCATCCGCGATTCCGTCACCTACACTG 12219 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | |||||| || ||||| || || ||||||| |||| || || ||||| || |||| Sbjct 12218 AACACGCTCGCCGAAAGACCGTGACGGCCATGGACGTCGTGTACGCTTTGAAGCGCCAAG 12159 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 12158 GCCGCACCCTGTACGGTTTCGGCGGTTAA 12130 >seq2659 Length=83484 Score = 179 bits (198), Expect = 6e-41 Identities = 202/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||| ||||||||||| ||||| Sbjct 72405 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGGATCACCAAGCCCGCTAT 72463 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || ||||||||| |||| || ||| |||| ||||| | Sbjct 72464 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCCGGTTTGATCTACGAAGAAAC 72523 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||| | | | ||| |||| || | | || ||||| Sbjct 72524 TCGTGGCGTCCTCAAGGTGTTCTTGGAAAACGTCATCCGCGACTCCGTGACGTACACCGA 72583 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| |||||||| |||| || || ||||| || ||||| Sbjct 72584 ACACGCTCGCCGAAAGACCGTCACGGCCATGGATGTCGTGTACGCTTTGAAGCGCCAAGG 72643 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 72644 CCGCACCTTGTACGGTTTCGGCGGTTAA 72671 >seq2115 Length=16165 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 7339 CGCCAAGCGCCATCGCAAGGTTCTTCGCGACAACATCCAAGGGATCACCAAGCCCGCCAT 7280 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||||||||| || ||||||||| ||||||| ||| |||||||||| | Sbjct 7279 CCGCCGTCTAGCTCGTCGTGGCGGTGTCAAGCGTATCTCTGGCTTGATCTATGAAGAAAC 7220 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||| | | | ||| |||| ||| | || || || || Sbjct 7219 CCGCGGCGTGCTCAAGGTGTTCTTGGAAAACGTCATCCGCGATTCCGTCACGTACACTGA 7160 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||| || ||||| || || ||||||| | || ||||| ||||| |||||||| Sbjct 7159 ACATGCTCGCCGAAAGACCGTGACAGCCATGGACGTTGTGTATGCGTTGAAGCGTCAAGG 7100 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || ||||| ||||| Sbjct 7099 CCGTACTTTGTACGGGTTTGGGGGTTAA 7072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069512096153