Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq916 122 7e-23 seq5958 118 9e-22 seq2657 104 2e-17 seq3609 98.7 8e-16 seq2971 91.5 1e-13 >seq916 Length=99455 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || || ||||| || || || || |||| | || |||||| | Sbjct 61070 AAATATGCAGATTTTCGTCAAGACTTTGACTGGGAAGACCATCACGTTGGACGTGGAACC 61011 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| | | ||| | |||| ||||| || ||||||||||| || || || || || Sbjct 61010 GTCCGACTCGATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCGCCTGA 60951 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || || | || ||||||||||| || || || ||| ||||||| | ||| || Sbjct 60950 CCAGCAGCGCTTGATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTGAGCGACTA 60891 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| ||||| ||||| || | || || || | || ||||||| ||| Sbjct 60890 CAACATCCAAAAGGAATCGACGTTGCACTTGGTGCTCCGCCTGCGCGGTGGT 60839 >seq5958 Length=27980 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || || |||| || || |||||| | || Sbjct 18498 ATGCAAATCTTCGTGAAGACGTTGACGGGAAAGACCATCACGCTCGACGTGGAACCTTCC 18557 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| |||||||||||||| || ||||| || || || Sbjct 18558 GACTCGATTGACAACGTGAAGCAAAAGATTCAAGACAAGGAAGGCATTCCCCCTGACCAG 18617 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| ||||| || || |||||| || ||| |||||| Sbjct 18618 CAGCGTTTGATCTTTGCTGGCAAGCAGTTGGAAGACGGCCGCACGCTCAGCGACTACAAC 18677 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||| || |||||| Sbjct 18678 ATCCAAAAGGAGTCCACC 18695 >seq2657 Length=89683 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || ||||| |||| | || |||||| | || Sbjct 86347 ATGCAAATCTTCGTCAAGACGTTGACGGGGAAAACCATCACGTTGGATGTGGAACCATCC 86288 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | ||| | | || ||||| || || |||||||| || ||||| || || || Sbjct 86287 GACTCGATCGACAACGTGAAGCAAAAGATCCAGGACAAGGAAGGGATTCCCCCGGACCAG 86228 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| || || || || |||||| | || |||||| Sbjct 86227 CAACGCCTCATCTTTGCCGGCAAGCAATTGGAAGACGGCCGCACGTTGAGTGACTACAAC 86168 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||| ||||| || Sbjct 86167 ATCCAAAAGGAATCGAC 86151 >seq3609 Length=34764 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | ||||| || || | || || || || || || | Sbjct 21583 GATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATAACCCTCGACGTCGAGCCCTC 21524 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || | | ||| | |||| ||||| || || |||||||| || || || || ||||| Sbjct 21523 GGACTCGATCGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCA 21464 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| || || ||||| || || || | || || |||||| | ||||||||| Sbjct 21463 GCAACGCCTCATCTTTGCGGGAAAGCAACTGGAAGACGGTCGCACCCTGAGCGATTACAA 21404 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || || ||| | ||||| || ||||| | || || ||| Sbjct 21403 CATCCAGAAGGAGTCGACCCTGCATTTGGTGTTGCGCCTCCGTGGCGGT 21355 >seq2971 Length=8032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/164 (74%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || || ||||| ||||| ||||| ||||| ||| ||||||||| || ||| | Sbjct 3686 ATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTGTACTCGATGATCTCGCAG 3627 Query 129757 CACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTGATT--ACTTTTCATGTTGCA 129812 ||||| || || | || || ||||||| | || || || |||| | |||||| Sbjct 3626 CACAAGTTGGACGACTTG--ATCGTGCCCAGGTTCTGCTGGTTGGACTTGCC--GTTGCA 3571 Query 129813 AGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct 3570 CGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCG 3527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419696176878865