Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3296 134 3e-26 seq124 113 9e-20 seq4078 102 2e-16 >seq3296 Length=14028 Score = 134 bits (148), Expect = 3e-26 Identities = 445/676 (66%), Gaps = 31/676 (5%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || ||||| || |||||||||||||| | | | |||||||| || || Sbjct 4455 GTGGGGTCGCTCTCGGGGGGATGGAAGATGAAGCTCGAATTGGCCCGCGCCATGCTCATG 4514 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| | | |||| || || || ||||||||| ||||| ||||||| || Sbjct 4515 AAGGCCGACATTTTGTTGCTGGACGAACCGACCAACCACTTGGACGTGGCCAACGTGGCA 4574 Query 279816 TGGCTAGTGTCCTACCT-AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| | | |||||| ||| | | | || || | || || |||| || ||||| Sbjct 4575 TGGCTCGAGAACTACCTGAACAACGCCGGCGAC-GTGACGTCGATCGTTGTGTCGCACGA 4633 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 || || ||||| || ||||||| | |||||| ||||| ||| | || | ||||| Sbjct 4634 TTCGGGGTTCCTCGACAACGTGTGCACCAACATCATCCACTACGAGAAGAACCGCAAGCT 4693 Query 279935 CTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTA 279994 | | | || | |||||| ||||| || |||| |||||| || || || || Sbjct 4694 CAAGACGTACGTGGGCAACATGTCTCACTTTGTGGAGCTGCGCCCGGAAGCCAAGGCGTA 4753 Query 279995 CTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTC-TGGAGG 280053 ||| ||||| ||| ||||| | || | ||||||||||| ||||||| ||| | Sbjct 4754 CTACAACCTGGAGGCGGCCACGTTCGCGTTCAAGTTCCCTGAGCC-GGGTTTCTTGGCCG 4812 Query 280054 GCATC-ACATCAAAGGATCGCGCA--AT---CATGAA-----GCTCCGTGGCGTCTCCTT 280102 |||| | | ||| || || || || |||||| ||| ||| | || | Sbjct 4813 ACATCAAGAACAAGGGCAAGCCCATCATCCGCATGAACAACTGCT-CGTACCAGTACCCT 4871 Query 280103 TGCTTATCCCAATGGCC--CCAACATCTTCAGCAGTGTCAACT-CGCAGGTTTCTATGAA 280159 || || | ||| | | || | || || ||| | ||| | | || Sbjct 4872 GGCACGACCAA---GCCGTCGATCAACAACATCACGATCACGTGCGC-GCTGTC------ 4921 Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 || || |||| || || || ||||| || || || ||||| ||| | ||||| | | Sbjct 4922 GTCGCGCATTGCCGTGATCGGGCCCAACGGCGCCGGCAAGTCGACCATGATCAAGATGTT 4981 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGG 280278 ||| ||||| || | || || ||| || | ||||||||||| |||||| | | Sbjct 4982 GACGGGCGAAGTGGAGCCGAC-GACCGGTACCATGTGGAAGCATCCGTCCATGCGCTTTG 5040 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||||| || ||||| || ||||| |||||||| | ||| ||||| |||| | |||| Sbjct 5041 CGTACGTGGCGCAGCATGCGTTCCATCACATCGAAGAGCACTTGGACTTGACGGCCAACC 5100 Query 280339 AATACATTCAGTGGCG 280354 | ||||| || ||||| Sbjct 5101 AGTACATCCAATGGCG 5116 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||| || |||| ||||| || ||||||||||| || ||||| | ||| ||||| || Sbjct 4104 GGTGAAGACTTGTGCGACTGCGAGTTCTCGCTCGCGTACGGTGGCATGATCCTGCTCAA- 4162 Query 279405 TCTACCCGCCTCAACA--TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 | || ||| || || ||||| ||| ||||||| || | || ||||| || | Sbjct 4163 -CAACGCGCGTCTGCAGCTCAAGAAGGGCCACCGGTACGGGTTGTGTGGCCCCAACGGCG 4221 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || ||| || || |||||||| || || ||||| ||| ||||||| || || Sbjct 4222 CCGGCAAGTCGACGCTCATGCGCGCGATCGCGAACGGCCAGTTGGAAGGGTTCCC 4276 >seq124 Length=47272 Score = 113 bits (124), Expect = 9e-20 Identities = 211/310 (68%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 218648 AAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACG 218707 |||| || || ||||| || | || || || | || || ||| | |||||||||| Sbjct 21828 AAGAGATCAAAGTCGCGCAACTGTCGGGGTACATTTCAGAGCATTCAGCGTACCATCACG 21887 Query 218708 GTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACA 218767 | || || ||| || || |||| | |||||||| || ||| || || || |||| Sbjct 21888 GCGAAGTGAATCTCCACGGCACCATCATCGGCATGGCCCAAAACTTCGTTGGAAGCAACA 21947 Query 218768 ACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATA 218827 |||| ||||||||| |||||||| |||||||| | || || |||| || |||||| Sbjct 21948 ACATCAACTTGCTGGCACCCAACGGCCAGTTTGGGACGCGACTCATGGGGGGCAAGGATG 22007 Query 218828 GTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC 218887 || ||| | ||| | |||||||| ||| | | || |||| || ||||||| Sbjct 22008 CCGCCAGTGCTCGTTATGTGTTTACAAACTTGGAGTATATCACCCGCCTTGTCTTCAATC 22067 Query 218888 AGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGT 218947 | || |||| || | || || || || ||||| || || ||||| ||| ||| Sbjct 22068 CGTTGGACGATGCCATCTTGAACTACCTGGAAGACGAAGGCCAGTCCATTGAACCCCAGT 22127 Query 218948 GGTATGTGCC 218957 |||| |||| Sbjct 22128 GGTACATGCC 22137 >seq4078 Length=2209 Score = 102 bits (112), Expect = 2e-16 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1428 GAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTC 1369 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 1368 GAGCCCCAC 1360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027754874661861