Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1997 253 4e-62 seq2971 250 5e-61 >seq1997 Length=17169 Score = 253 bits (280), Expect = 4e-62 Identities = 581/869 (67%), Gaps = 23/869 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| |||| |||| | ||| ||||||||||| || || | |||||| || Sbjct 6383 GATCCAGCATGCGGACGTGTGGGAAATGTACAAGAAAGCCGAGGCGAGCTTCTGGACTGC 6324 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC--TGTCTGAGAACGAA 42401 |||||| | ||| ||| | || | || |||| ||| |||| || ||||| Sbjct 6323 CGAGGAACTCGACTTGGTGCACGATCAGCGCGACTGGA--TCAAGTTGTCGGACAACGAG 6266 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| ||| || | ||||| ||||| || || |||||||| ||||| || Sbjct 6265 CGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGACGGCATCGTCAACGAA 6206 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 |||||||||| | || | || || ||||| | |||||||| ||||| || || Sbjct 6205 AACCTGGCCATGAACTTTAGCAATGAAGTGCAAGTCCCCGAGGCGCGATGCTTTTATGGG 6146 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 ||||| || ||||| || ||| | ||||| || |||||| | || || |||| ||| Sbjct 6145 TTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTCGCTCCTCATCGACACATAC 6086 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| || |||| || | || | ||||| || || || || ||| || Sbjct 6085 ATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCATCGAAACCATTCCGTGCGTC 6026 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | | ||||| ||||||||||||| ||| ||| | ||| ||| || |||| Sbjct 6025 ATGCGCAAGGCCAACTGGGCGCTCAAGTGGTGCGACAACAAGCGCGCCGCGTACGCCGAG 5966 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | | || || || ||||||| || |||||||||||||| || | ||| ||||||| Sbjct 5965 CGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTCTCCGGTTCGTTCTGCTCCATC 5906 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||||||| || | | ||||| || || | |||||||||||||||||| Sbjct 5905 TTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCGTTCTCGAACGAACTCATCTCG 5846 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | ||||| || ||||| | |||||||| ||| | ||| ||||| | | ||| || Sbjct 5845 CGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATGTACTCGAAGCTCGTCA---AC 5789 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| ||| | ||| ||| | || || || ||||| |||||||||||| || Sbjct 5788 AAGCTGTCGGACACGCGCATCCACGAGATTGTCGGCGATGCCGTTGAGATCGAGAAGCAG 5729 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || | | || |||||||| || | ||||||||| | ||||||||| | Sbjct 5728 TTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGCATGAACTCGGCGCTCATGTGCGAA 5669 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 ||||| ||| | |||||| | ||||| | || | | | |||| | | | | Sbjct 5668 TACATTGAGTTCTGCGCCGATCGCCTCCT----CGAATCGCT---TGGCGCCCCCA-AGC 5617 Query 43062 AC------GCC--GTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCA 43113 | ||| | |||||| |||| ||||| | ||||| ||| | ||||| |||| Sbjct 5616 TCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATCTCATTGCAAGGCAAAACCA 5557 Query 43114 ACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||||||||||||||||||| | ||| ||| Sbjct 5556 ACTTTTTCGAGAAGCGCGTGGGCGAGTAC 5528 >seq2971 Length=8032 Score = 250 bits (276), Expect = 5e-61 Identities = 865/1338 (65%), Gaps = 65/1338 (5%) Strand=Plus/Minus Query 243776 AGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGC 243835 ||||||||||| |||||||| | || | ||| || | | |||||||| ||| ||| Sbjct 4553 AGGTAGTACATACCGGTCTTCAAGCCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGC 4494 Query 243836 TTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGG 243895 || | || |||| |||||| | | || ||| | | ||||| ||| Sbjct 4493 TTACTGAT-----GCTT-GGGTCGGCGATGTGCAC------GTTCATGCTTTGGCTTTGG 4446 Query 243896 TCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATAC 243955 || ||| | | || || ||||||| | || | | |||| || ||||| || Sbjct 4445 CAGATGAACGCACCGCGGTCGGCGGCCAAGTCGAGCACGACCTTTTGCTTGATCTCCCAC 4386 Query 243956 GCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCC 244015 | |||||||| | ||||| || | |||||| ||| ||| || || ||| Sbjct 4385 ACAGTCTTGTACACTTCCTTGACGTCCGCGGGGATGGACGCGACGTTTTGAACGCTGCCG 4326 Query 244016 TTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA-GCGCTCCAGCGC 244074 || | || |||| |||| | || ||||||||| |||| | | || ||| | Sbjct 4325 CGGTCATGCAAGATCTGGTTGCGGACGTCGCTGTTCCACAGACCCAGCGAGATC-AGCTC 4267 Query 244075 CTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAG 244134 || | || || | |||| || | || || |||| || |||||||| ||| | Sbjct 4266 CTTCATCAAGTACTTGTTAACGATGGTGAATTCGCCCGCGAGGACGCGGCGGCTGTACAT 4207 Query 244135 GTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGT 244194 |||| | | ||||||||| || ||||||| || |||||||| ||| ||| || Sbjct 4206 GTTGGACGTAAACGGCTCGATTGATTCGTTGTTGCCGAGGATCTGCGCGGTGGACGCCGT 4147 Query 244195 CGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-----TGCGGAGT 244249 |||||||| | || ||||| ||| | | ||||||| ||| |||| | Sbjct 4146 GGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATGCCGTGC---TGGGCCACTTGCGCCTT 4090 Query 244250 CTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCA 244309 |||| ||| ||||||| |||| | ||| || |||||||| ||| Sbjct 4089 --GAGCGACGCCCAATCCCACAGATCCGACGG-------CGT--GACGCCCCACAAGTCG 4041 Query 244310 AACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGC 244369 |||| | | |||| || |||||| ||||||||||||| ||| || || | || | Sbjct 4040 TACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCTCGTACGGCCCTTGGCTC 3981 Query 244370 TGGGCCAGCTTACA-GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTT 244428 | ||| || || || | | || | |||||||| ||||||||| || |||||| || Sbjct 3980 TTGGCGAG-TTCCATGGACGTTTCCATGGCGGCGTGGTAGATGGTTTCAAAGATCTGCTG 3922 Query 244429 GTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGC 244488 ||||| | ||| | | | ||| | | ||||| | ||||| ||||||| Sbjct 3921 GTTCAGCACCTTGGCTTCCACCGACTCGAACGAGTACCCCATGAGGATGAACGCGTCGGC 3862 Query 244489 CAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG---CGCATGGCTTC 244545 || || || ||||| || ||||| || | ||| ||| ||||| | ||| ||||| Sbjct 3861 AAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTTGCTGTTGCGC---GCTTC 3805 Query 244546 GGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC 244605 | | ||||||| ||||| ||||||||||||||||||||||| |||| || | | Sbjct 3804 TTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGTCGTGACCACCTTGGC 3745 Query 244606 GACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCAC 244665 || | | ||| | |||||| || || | | |||| || Sbjct 3744 GATCTTGTGCAGGTGTGCAAAGTCAAACACGGCG---TTCTCG---------------AC 3703 Query 244666 AAACTCGTTGA--GGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 ||||| |||| | |||| | |||| |||||| |||||||| || ||| | | ||| Sbjct 3702 AAACT--TTGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTG 3645 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || |||||| ||| | ||| ||||||| |||||||||| ||| || ||| Sbjct 3644 TACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTG 3585 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 |||||| ||||||| || |||||||| |||||| | ||| ||||| |||| || | Sbjct 3584 GACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGAC 3525 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 | | || | | ||| | | | ||||||| |||| |||| || ||| || | | Sbjct 3524 TCCAAGATGGCGAACCACAACTGCTGCGCCTTGATCGTCTTGCGCGCACGGCCTTCCGAC 3465 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 ||||| | | |||| ||||||||||||| ||||||| |||| | ||| ||| | Sbjct 3464 TCGTACTTGTGGAACAGCGCCTCGAACTCGGCGCCCCAGCATTCGTGCA-GCCCCGGCGC 3406 Query 244964 GACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022 | ||| || | | ||||| |||||| || ||| | || |||||| || || Sbjct 3405 TTCATTGGGACAGAACAAGCTCCAGTCGCCGTTCGACTCGACGCGCTTCATGAACAGATC 3346 Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082 || ||||| | ||| | ||| | ||| | || | ||| || ||| |||||| Sbjct 3345 CGGAATCCACATGGCGTAGAACAAGTCGCGGGCACGATGCAGTTCATTGCCGTGGTTCTT 3286 Query 245083 CCTCAGCTCCAAAAAGTC 245100 | | || ||||| || || Sbjct 3285 CTTGAGATCCAAGAATTC 3268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944265765822960