Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq916 134 3e-26 seq5958 127 5e-24 seq2657 122 2e-22 seq3609 114 3e-20 >seq916 Length=99455 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | || | ||| ||| |||||||| || |||||| Sbjct 60840 CCACCGCGCAGGCGGAGCACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTC 60899 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| ||||| || || || ||||||| ||||| || | ||| Sbjct 60900 AAGGTGCGGCCATCTTCCAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 60959 Query 288367 ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || || ||||| ||| |||| ||||| || || || ||| || ||| || Sbjct 60960 ATGCCTTCCTTGTCTTGGATCTTTTGCTTG-ACGTTGTCAATCGAGTCGGACGGTTCCAC 61018 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||| |||||||| |||| |||||||||||| |||||||| Sbjct 61019 GTCCAACGTGATGGTCTTCCCAGTCAAAGTCTTGACGAAAATCTGCAT 61066 >seq5958 Length=27980 Score = 127 bits (140), Expect = 5e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||| ||||||||| |||||||| || || || || || ||| Sbjct 18688 TCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAAG 18629 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 |||| |||||| || | || || ||||| || || || || ||| |||| |||||| Sbjct 18628 ATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTT-CACGTT 18570 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || ||| | ||| || ||||||||||| ||||| || |||| ||||| || Sbjct 18569 GTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCAC 18510 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 18509 GAAGATTTGCAT 18498 >seq2657 Length=89683 Score = 122 bits (134), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| ||| |||||||| || ||||| Sbjct 86121 CCACCACGCAGGCGGAGCACGAGGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCACTC 86180 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| |||||||| ||||| || || || ||||| || || || || || ||| Sbjct 86181 AACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAGATGAGGCGTTGCTGG---TCCGGG 86237 Query 288367 ---ATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || |||||||| ||| |||| |||||| || || || ||| | ||| Sbjct 86238 GGAATCCCTTCCTTGTCCTGGATCTTTTGCTT-CACGTTGTCGATCGAGTCGGATGGTTC 86296 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | |||||| || ||||| |||| ||||||||||| || ||||| Sbjct 86297 CACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGACGAAGATTTGCAT 86347 >seq3609 Length=34764 Score = 114 bits (126), Expect = 3e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||| || ||||| |||||||| | ||| ||||| || ||| Sbjct 21392 TCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCTTCCAGTTGCTTTCCCGCAAAG 21451 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT-TTTCGCTTTCACGTT 288401 || || || || ||| | ||||||||||| || |||||||| ||| || || ||||| Sbjct 21452 ATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTTTGC-TTGACGTT 21510 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || || || | || || ||||| || || ||||| ||||| || |||||||| Sbjct 21511 GTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGAC 21570 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 21571 GAAGATTTGCAT 21582 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | || || || ||||| || |||||| Sbjct 21584 CCACCACGCAGGCGAAGCACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTC 21643 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| || || || ||||| || |||||||| ||| Sbjct 21644 AGGGTACGACCGTCTTCCAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGG 21703 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| ||| || ||||| || || || || | || || Sbjct 21704 ATGCCTTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAGGGCTCGACG 21763 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||| || ||||||||||| || ||||| Sbjct 21764 TCGAGGGTTATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179560373802838