Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3296 118 2e-21 >seq3296 Length=14028 Score = 118 bits (130), Expect = 2e-21 Identities = 430/664 (65%), Gaps = 18/664 (3%) Strand=Plus/Minus Query 333337 AACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAG 333396 ||||||||||||| |||||||||| |||| ||| | || || |||||||| ||||| | Sbjct 5118 AACGCCATTGGATGTACTGGTTGGCCGTCAAGTCCAAGTGCTCTTCGATGTGATGGAACG 5059 Query 333397 CATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGG 333456 ||||||| |||||||| |||| ||||| ||||||||||| | | ||| | || | Sbjct 5058 CATGCTGCGCCACGTACGCAAAGCGCATGGACGGATGCTTCCACATGGTACCGGTCGTCG 4999 Query 333457 CTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTA 333516 |||| || ||||| | || ||| || | || || || || || || || | Sbjct 4998 GCTCCACTTCGCCCGTCAACATCTTGATCATGGTCGACTTGCCGGCGCCGTTGGGCCCGA 4939 Query 333517 CCACACCAATCCTGGAGTTCAGCG-ATACCTGGGCATTCACGTTGTCAAAGATTAGTTTT 333575 ||| |||| | || ||||| || || | | | ||||| | | || Sbjct 4938 TCACGGCAATGCGCGACGACAGCGCGCACGTGATC-GTGATGTTGTTGATCGACGGCTTG 4880 Query 333576 TCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTC------ATGATGGCACGGTCC 333629 ||| || || |||| | || | | || | ||| ||||||| | || Sbjct 4879 GTCGTGCCAGGGTACTGGTAC----GAGC-AGTTG-TTCATGCGGATGATGGGCTTGCCC 4826 Query 333630 TTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCG 333689 || |||| | | | ||| || ||||| |||||||| ||| | | | | | | Sbjct 4825 TTGTTCTTGATGTCGGCCAAGAAACCCGGCTCAGGGAACTTGAACGCGAACGTGGCCGCC 4766 Query 333690 GTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCC 333749 ||| |||||| | | ||| || ||| || ||| || | |||| || ||| Sbjct 4765 TCCAGGTTGTAGTACGCCTTGGCTTCCGGGCGCAGCTCCACAAAGTGAGACATGTTGCCC 4706 Query 333750 TTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCG 333809 |||| |||| ||||| |||| ||||| ||||| || |||||| || |||| Sbjct 4705 ACGTACGTCTTGAGCTTGCGGTTCTTCTCGTAGTGGATGATGTTGGTGCACACGTTGTCG 4646 Query 333810 AGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTA- 333868 |||||||| || ||||| ||||||| | ||| ||||| |||| ||||||| Sbjct 4645 AGGAACCCCGAATCGTGCGACACAACGATCGACGTCACGTCGCCGGCGTTGTTCAGGTAG 4586 Query 333869 TTCAATC-AGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTA 333927 ||| || ||||| |||||| | ||| | ||||||||||| ||||| || | | Sbjct 4585 TTC--TCGAGCCATGCCACGTTGGCCACGTCCAAGTGGTTGGTCGGTTCGTCCAGCAACA 4528 Query 333928 GTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTG 333987 | | || |||| |||||| || || || | |||| ||||| ||||| || || | Sbjct 4527 AAATGTCGGCCTTCATGAGCATGGCGCGGGCCAATTCGAGCTTCATCTTCCATCCCCCCG 4468 Query 333988 AAAG 333991 | || Sbjct 4467 AGAG 4464 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 || ||||||||||| | ||| |||||| | || |||||||| || || || || || || Sbjct 4279 GACGGGAACCCTTCCAACTGGCCGTTCGCGATCGCGCGCATGAGCGTCGACTTGCCGGCG 4220 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTC 334298 ||||| || ||||||| ||||| |||| || ||| || | | |||| ||||| Sbjct 4219 CCGTTGGGGCCACACAACCCGTACCGGTGGCCCTTCTTGAGCTGCAGACGCGCGTTGTTG 4160 Query 334299 AGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACT 334358 || || || | ||||| || || || || || || || || |||| || ||||| || Sbjct 4159 AGCAGGATCATGCCACCGTACGCGAGCGAGAACTCGCAGTCGCACAAGTCTTCACCCACG 4100 Query 334359 TCT 334361 ||| Sbjct 4099 TCT 4097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102792093226350