Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1997 159 4e-34 seq2971 123 3e-23 >seq1997 Length=17169 Score = 159 bits (176), Expect = 4e-34 Identities = 353/512 (69%), Gaps = 28/512 (5%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| || || || | ||| ||| | Sbjct 5522 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTGGTTTTGCCTTGCAATGAGATCAT 5581 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTT--GGCACCCCAATCTGTTTG 125869 ||||| | ||||| |||||||| | |||| | | || | |||| | || | Sbjct 5582 GTCCATCCAGTCAAAGGGGTTCTTGGCCG--CAAAGAGCTTGGGGGCGCCAAGCGATTCG 5639 Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 ||||| ||||| | | | |||||||||| || |||| | | |||||||| || ||| Sbjct 5640 AGGAGGCGATCGGCGCAGAACTCAATGTATTCGCACATGAGCGCCGAGTTCATGCCAATG 5699 Query 125930 AGGTTACATGGG--AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCA 125987 || || || ||| ||| | || | ||| |||||| || || ||||| || | | Sbjct 5700 AG-TTCCACGGGCAAGCTC-TCGCTCACAAACTGCTTCTCGATCTCAACGGCATCGCCGA 5757 Query 125988 CGATGGCGTGAATG---GTGTCCACCCCAGGTCTATTG-CGCAAAGTCTTGAAGAGTTC- 126042 | || |||| ||| |||||| | || | | ||| || || ||| |||| | Sbjct 5758 CAATCTCGTGGATGCGCGTGTCCGAC--AGCT-TGTTGACG---AG-CTTC--GAGTACA 5808 Query 126043 -CACG---GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 126098 || | ||||| || ||| || || ||||| || ||||||||||| |||||||| Sbjct 5809 TCAAGCATGCAAAGTCGCAGTGCAGGCCTTCGTCGCGCGAGATGAGTTCGTTCGAGAACG 5868 Query 126099 ACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGA 126158 |||| || |||||||| || |||||||| | ||| || || | || || ||||| |||| Sbjct 5869 ACAGGCCCGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAGCAGAACGAACCGGAGA 5928 Query 126159 AGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTT 126217 ||||||| || ||||| |||||||| | || ||||| || | | ||||| ||| Sbjct 5929 AGAAGATGCCTTCCACGGCGGCGAACGCGACGATGCGCTCGGCGTACGCGGCGCG-CTTG 5987 Query 126218 GTGTCAAACCACTTCATCGCCCACTGCGCCTT 126249 |||| ||||||| | |||||| | ||||| Sbjct 5988 TTGTCGCACCACTTGAGCGCCCAGTTGGCCTT 6019 >seq2971 Length=8032 Score = 123 bits (136), Expect = 3e-23 Identities = 687/1083 (63%), Gaps = 30/1083 (3%) Strand=Plus/Minus Query 113565 TGAACTGAATGG-GTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 113623 |||||||||| | ||| || |||| || |||||||||||||| || ||||| | Sbjct 4588 TGAACTGAATCGCGTCA-GCTTTGGGGCGCGAGCGGAGGTAGTACATACCGGTCTTCAAG 4530 Query 113624 CCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATG 113683 || ||||||| ||||| | ||||| || | | ||| || |||| | ||| Sbjct 4529 CCGCGCTTCCACGCATAAAAGTGCATGGACGTGAGCTTACTGATGCTTGGGTCGGCGATG 4470 Query 113684 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATC 113743 | |||||| |||||| ||| |||||| || || || || |||| || | | Sbjct 4469 TGCACGTTCATGCTTTGGCTTTGGCAGATGAACGCACCGCGGTCGGCGGCCAAGTCGAGC 4410 Query 113744 ACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATA 113803 || |||| |||||| ||||||||||| |||| | | ||| | || | ||||| Sbjct 4409 ACGACCTTTTGCTTGATCTCCCACACAGTCTTGTACACTTCCTTGACGTCCGCGGGGATG 4350 Query 113804 TCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTC---ATATCCTTT 113860 | ||| ||||| | | ||| | | | || || || | || | || | Sbjct 4349 GACGCGACGTTTTGAACGCTGCCGCG-GTCATG--CAAGATCTGGTTGCGGACGTCGCTG 4293 Query 113861 GACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCA 113920 ||| ||||| | | | || |||| || | | ||| || || | || || Sbjct 4292 TTCCACAGACCCAGCGAGATCAGCTCCTTCATCAAGTACTTGTTAACGATGGTGAATTCG 4233 Query 113921 CCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTA 113980 ||||||||| ||| | || || |||| ||| | ||||| | | || ||||| Sbjct 4232 CCCGCGAGGACGCGGCGGCTGTACATGTTGGACGTAAACGGCTCGATTGATTCGTTGTTG 4173 Query 113981 CCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGA 114040 || | ||| || |||||||| || ||||||||||| |||| ||| || ||| |||| Sbjct 4172 CCGAGGATCTGCGCGGTGGACGCCGTGGGCATGGGGGCCAAGAGCAGCGAGTTGCGGATG 4113 Query 114041 CCCTTTTC--CCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA--GTTGAG-CTTTGTCT 114095 || | | || |||| ||||||| | |||| || | | | | | || Sbjct 4112 CCGTGCTGGGCCACTTGCG--CCTTGAGCGACGCCCAATCCCACAGATCCGACGGCGTGA 4055 Query 114096 CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCT 114155 | ||| |||| || |||||| | || || | || || ||||| | |||| Sbjct 4054 CGCCC---CACAAGTCGTACTGGAACTTGCCCTGACTCACGGGGGAGCCCTCGTAGGTCT 3998 Query 114156 CGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 114215 |||| || || | || || | ||| | || || | ||| ||||| || || | Sbjct 3997 CGTACGGCCCTTGGCTCTTGGCGAGTTCCATGGACGTTTCCATGGCGGCGTGGTAGATGG 3938 Query 114216 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT-CGGCAC 114274 | ||||| || | |||| ||||||| || | || || |||| ||| | || Sbjct 3937 TTTCAAAGATCTGCTGGTTCAGCACCTTGGCTTCCACCGACTCGAACG--AGTACCCCAT 3880 Query 114275 AAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 114333 | || || | || || || |||||||| || | || || ||||| || | ||| || Sbjct 3879 GAGGATGAACGCGTCGGCAAGGCCTTGGACGCCAATCCCGATCGGGCGGTGGCGCATGTT 3820 Query 114334 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 || || || | | ||| ||| | || ||||| ||| | || || || | Sbjct 3819 GCTGTTGCGCGCTTCTTGGATGGGGTAATAGTTGACGTCGATCACCTTGTTGAGGTTGGT 3760 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCAT 114452 ||||| ||||| | ||| | || || | | | | ||||| || ||| |||| Sbjct 3759 CGTGACCACCTTGGCGATCTTGTGCAGGTGTGCAAAGTCAAACACGGCGT-TCTC----- 3706 Query 114453 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 114512 |||| |||| | || ||||| ||||||| || ||||| | || ||||| | Sbjct 3705 -GACAAACTTTGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCG 3647 Query 114513 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 114572 ||||||| || || || ||||| || || ||| || ||||||| ||||| || | Sbjct 3646 TGTACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGT 3587 Query 114573 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 114632 | ||||| ||| |||||||||||||| |||||||| ||||| || || || ||| | Sbjct 3586 TGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCG 3527 Query 114633 ACT 114635 ||| Sbjct 3526 ACT 3524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597307148290680