Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2657 114 1e-20 seq3609 113 5e-20 seq5958 107 2e-18 seq916 93.3 5e-14 seq3082 87.8 2e-12 >seq2657 Length=89683 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| ||| || || || |||| || | ||||| || || || Sbjct 86157 TCCTTTTGGATGTTGTAGTCACTCAACGTGCGGCCGTCTTCCAATTGCTTGCCGGCAAAG 86216 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | ||||||||| ||| ||||| || | ||| Sbjct 86217 ATGAGGCGTTGCTGGTCCGGGGGAATCCCTTCCTTGTCCTGGATCTTTTGCTTCA-CGTT 86275 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || |||| | ||||||||| | |||||||||||| ||||| | |||||| || Sbjct 86276 GTCGATCGAGTCGGATGGTTCCACATCCAACGTGATGGTTTTCCCCGTCAACGTCTTGAC 86335 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 86336 GAAGATTTGCAT 86347 >seq3609 Length=34764 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||||||||| || |||||| || || |||||||| ||| || || || Sbjct 21368 CGCAACACCAAATGCAGGGTCGACTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCG 21427 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || ||||| || || || ||||| || ||||| || | || | | |||||| Sbjct 21428 TCTTCCAGTTGCTTTCCCGCAAAGATGAGGCGTTGCTGATCAGGAGGGATTCCTTCCTTG 21487 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| ||||| |||| ||| | | | || ||| | || || |||| || || Sbjct 21488 TCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTAT 21546 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| || ||||||||||| Sbjct 21547 GGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||||| || |||||| || || ||||| || ||| || || |||| || Sbjct 21601 CACCAAATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTACGACCGTCTTC 21660 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| || || || || || ||||| ||||| | || | || ||||||||| Sbjct 21661 CAGTTGCTTCCCCGCAAAGATAAGGCGCTGTTGGTCCGGGGGGATGCCTTCCTTGTCCTG 21720 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || || |||| ||| | | | || ||| | || || |||| || ||||| | Sbjct 21721 GATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGAGGGCTCGACGTCGAGGGTTATGGTCT 21779 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || ||||||||||| Sbjct 21780 TGCCGGTGAGGGTCTTGACGAAGATTTGCAT 21810 >seq5958 Length=27980 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| || || || || |||| || | |||||| ||||| || Sbjct 18689 CTCCTTTTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCTTCCAACTGCTTGCCAGCAAA 18630 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | ||||||||||| | || | || |||||||| || ||||| || | ||| Sbjct 18629 GATCAAACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGAATCTTTTGCTTCA-CGT 18571 Query 42137 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || || |||| | |||||| |||| ||||||||| || ||||| | |||||| | Sbjct 18570 TGTCAATCGAGTCGGAAGGTTCCACGTCGAGCGTGATGGTCTTTCCCGTCAACGTCTTCA 18511 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 18510 CGAAGATTTGCAT 18498 >seq916 Length=99455 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| ||||| || |||||||| || ||||| || || || || | || || Sbjct 60857 CACCAAGTGCAACGTCGATTCCTTTTGGATGTTGTAGTCGCTCAAGGTGCGGCCATCTTC 60916 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | ||||| || || || || | ||||||||||| | || | || |||||||| Sbjct 60917 CAATTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTG 60976 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| ||||| |||| ||| | | | || |||| || |||||| || | ||||||||| | Sbjct 60977 GATCTTTTGCTTGA-CGTTGTCAATCGAGTCGGACGGTTCCACGTCCAACGTGATGGTCT 61035 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT-TTTCA 42213 | || || | ||||| || || || ||||| ||||| Sbjct 61036 TCCCAGTCAAAGTCTTGACGAAAATCTGCATATTTCA 61072 >seq3082 Length=42813 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| ||||| || | | ||| |||||| |||| |||||||||||||| | | Sbjct 20260 ATGAAAAAAGATCTCCCCGTCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCAGGTA 20201 Query 57055 TACTCACCACTATACTACCGAGGATTGAATA-TATAACTTGAATA-TTGCAATTTAG 57109 |||| |||||||||||| ||||||| ||| ||||| |||| | | |||||| || Sbjct 20200 TACTGACCACTATACTAACGAGGATCATATACGATAACATGAAAAGTAGCAATTAAG 20144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543170558414640